SCN Proteipedia

Hg_chrom2_TN10mRNA_3583

Organism: Heterodera glycines Gene Locus: chr2:7465022-7472831 Feature type: polypeptide

Protein Sequence

Length: 1,135

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.799	1.168	0.753	0.76	1.013	1.175	0.86	1.762	1.351	1.238	0.734	2.125	1.542	0.864	1.349	0.806	0.722	0.948	0.542	0.881	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3406	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.941

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRNFPLALRRRAFRDKGK	—	—	—	—	—	—	0.000	—	—	0.725	0.176	0.004	0.227	0.088	0.063	0.018	0.015	0.117	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006951	1.000	1.000	Hsc_gene_21542.t1	Hsc_gene_21542.t1;Hsc_gene_21542.t2	—	Q27493.1 DNA-directed RNA polymerase I subunit RPA2 homolog [Caenorhabditis elegans]	KAF7635202.1 DNA-directed RNA polymerase subunit beta [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0005634\|GO:0006351\|GO:0032549	GO:0008150_0.792\|GO:0005575_0.785\|GO:0110165_0.740\|GO:0005622_0.671\|GO:0009987_0.669\|GO:0016020_0.628\|GO:0043226_0.601\|GO:0043229_0.587\|GO:0043227_0.549\|GO:0008152_0.544\|GO:0043231_0.536\|GO:0044238_0.517\|GO:0044237_0.510	IPR007120+654-1016+\|IPR007121+865-877+\|IPR007641+1018-1126+\|IPR007642+198-340+\|IPR007644+7-378+\|IPR007645+433-497+\|IPR009674+540-603+\|IPR014724+683-861+\|IPR015712+8-1128_9-1125+\|IPR037033+654-1002+\|IPR037034+159-333+	—	PF00562+654-1016+RNA_polymerase_Rpb2,_domain_6\|PF04560+1018-1126+RNA_polymerase_Rpb2,_domain_7\|PF04561+198-340+RNA_polymerase_Rpb2,_domain_2\|PF04563+7-378+RNA_polymerase_beta_subunit\|PF04565+433-497+RNA_polymerase_Rpb2,_domain_3\|PF06883+540-603+RNA_polymerase_I,_Rpa2_specific_domain	G3DSA:2.40.270.10:FF:000006+653-752+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:2.40.270.10:FF:000011+855-1002+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1800.10:FF:000004+1003-1128+DNA-directed_RNA_polymerase_subunit_beta	PTHR20856+8-1128+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1135	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.772	128437.930	8.493	34.000	25.198	12.775	44.846	55.154	14.978	10.220	46.256

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey60	2077.152	3910.378	1896.403	2116.903	2213.221	1803.312	2485.531	1749.054	1359.577	2002.307	1726.851

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.274	-1.022	0.268	—	-0.281	0.473	—	0.649	—	—	—	—	—

No JSON data available for plots.

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