Hg_chrom2_TN10mRNA_3589
Organism: Heterodera glycines Gene Locus: chr2:7493485-7494956 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.475 | 1.017 | 1.272 | 0.603 | 1.02 | 1.271 | 0.764 | 1.458 | 1.166 | 1.576 | 0.265 | 1.886 | 1.377 | 1.009 | 1.547 | 0.833 | 0.813 | 1.104 | 0.673 | 1.115 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3411
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.626
|
0.179
|
0.140
|
0.740
|
0.148
|
0.351
|
0.156
|
0.011
|
0.108
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001146
|
3.000
|
2.000
|
Hsc_gene_21595.t1;Hsc_gene_21599.t1
|
Hsc_gene_21595.t1;Hsc_gene_21599.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7639056.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.811|GO:0003674_0.787|GO:0009987_0.742|GO:0005575_0.725|GO:0110165_0.722|GO:0003824_0.679|GO:0005622_0.638|GO:0005737_0.597|GO:0016787_0.587|GO:0065007_0.586|GO:0140096_0.580|GO:0050789_0.577|GO:0016020_0.574|GO:0016788_0.562|GO:0050794_0.552|GO:0016791_0.546|GO:0042578_0.546|GO:0004721_0.541|GO:0008152_0.501
|
IPR004843+98-295+|IPR006186+70-343_98-125_127-154_160-184_161-166_198-224_228-255_285-305_307-323+|IPR029052+55-341_70-341+|IPR050341+65-333+
|
SM00156+70-343+
|
PF00149+98-295+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+65-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
1wao_4
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
39326.810
|
5.097
|
-8.000
|
25.364
|
12.536
|
45.481
|
54.519
|
12.245
|
13.120
|
46.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
10.738
|
0.000
|
0.000
|
0.061
|
0.000
|
0.122
|
0.000
|
0.000
|
0.000
|
46.911
|
26.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — |
-9.235
|
— | — |
No JSON data available for plots.