Hg_chrom2_TN10mRNA_3591
Organism: Heterodera glycines Gene Locus: chr2:7501758-7502350 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.486 | 1.574 | 0.547 | 0.0 | 0.752 | 0.964 | 1.074 | 0.752 | 1.504 | 1.016 | 0.57 | 0.885 | 1.044 | 0.868 | 0.614 | 1.182 | 1.109 | 1.481 | 0.0 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3413
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.537
|
0.425
|
0.034
|
0.586
|
0.071
|
0.278
|
0.089
|
0.698
|
0.103
|
0.388
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003354
|
2.000
|
1.000
|
Hsc_gene_21558.t1
|
Hsc_gene_21558.t1
|
— |
Q3T114.3 2-iminobutanoate/2-iminopropanoate deaminase [Bos taurus]
|
XP_008146739.1 2-iminobutanoate/2-iminopropanoate deaminase [Eptesicus fuscus]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.685|GO:0110165_0.669|GO:0008150_0.668|GO:0003674_0.601|GO:0009987_0.596|GO:0005622_0.582|GO:0005737_0.582|GO:0016020_0.578
|
IPR006056+6-127+|IPR006175+1-128_10-127+|IPR019897+104-122+|IPR035959+3-131_4-130+
|
— |
PF01042+10-127+Endoribonuclease_L-PSP
|
G3DSA:3.30.1330.40:FF:000001+1-128+L-PSP_family_endoribonuclease
|
PTHR11803+1-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-133
|
1nq3_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
13893.750
|
6.460
|
0.000
|
15.789
|
8.271
|
41.353
|
58.647
|
8.271
|
7.519
|
60.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
steelblue
|
567.305
|
304.733
|
812.109
|
670.386
|
603.534
|
647.105
|
898.585
|
909.665
|
484.423
|
301.348
|
379.809
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.186
|
1.000
|
-0.169
|
-0.184
|
— |
0.484
|
0.387
|
— | — | — | — | — | — |
No JSON data available for plots.