Hg_chrom2_TN10mRNA_3597
Organism: Heterodera glycines Gene Locus: chr2:7527515-7528884 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.337 | 1.162 | 0.441 | 1.171 | 1.311 | 0.609 | 1.118 | 1.349 | 1.338 | 0.823 | 0.752 | 2.307 | 1.044 | 1.239 | 0.867 | 0.629 | 0.775 | 1.229 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3419
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKFVQMAHDTVRRSRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.371
|
0.033
|
0.460
|
0.261
|
0.437
|
0.427
|
0.186
|
0.199
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006956
|
1.000
|
1.000
|
Hsc_gene_21550.t1
|
Hsc_gene_21550.t1
|
— |
A7RRG3.1 Protein AKTIP homolog [Nematostella vectensis]
|
KAI1723336.1 ubiquitin-conjugating enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.937|GO:0009987_0.886|GO:0005575_0.709|GO:0110165_0.709|GO:0016020_0.653|GO:0005622_0.637|GO:0003674_0.619|GO:0005737_0.594|GO:0065007_0.567|GO:0050789_0.552|GO:0008152_0.545|GO:0050794_0.533|GO:0044238_0.520|GO:0044237_0.517
|
IPR000608+70-222_77-215+|IPR016135+64-226_65-228+|IPR050113+76-221+
|
SM00212+73-222+
|
PF00179+77-215+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+76-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
36255.180
|
5.927
|
-2.500
|
27.157
|
14.696
|
47.923
|
52.077
|
13.738
|
13.419
|
44.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
873.100
|
794.502
|
635.304
|
623.253
|
632.757
|
579.849
|
522.304
|
750.886
|
1023.118
|
1350.401
|
1210.137
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
-0.487
|
— | — | — | — | — |
-0.385
|
— | — | — | — | — |
No JSON data available for plots.