Hg_chrom2_TN10mRNA_3599
Organism: Heterodera glycines Gene Locus: chr2:7533128-7535192 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.613 | 0.908 | 0.923 | 0.202 | 1.4 | 1.502 | 0.628 | 1.465 | 0.911 | 1.188 | 0.947 | 2.183 | 1.628 | 1.277 | 1.435 | 0.949 | 0.64 | 0.621 | 1.502 | 1.091 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3421
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKMDERRDEESRKKPL
|
15-35
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.153
|
0.913
|
0.037
|
0.185
|
0.039
|
0.066
|
0.088
|
0.008
|
0.043
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006958
|
1.000
|
1.000
|
Hsc_gene_21553.t1
|
Hsc_gene_21553.t1
|
— | — |
KAI1712752.1 phosphatidylethanolamine-binding protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.903|GO:0110165_0.903|GO:0005622_0.880|GO:0016020_0.836|GO:0043226_0.827|GO:0043229_0.818|GO:0043227_0.793|GO:0043231_0.766|GO:0005737_0.763|GO:0005739_0.558
|
IPR008914+271-330+|IPR035810+160-366_177-360+|IPR036610+152-379_270-374+
|
— |
PF01161+271-330+Phosphatidylethanolamine-binding_protein
|
— |
PTHR11362+160-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
486-512
|
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
59944.130
|
7.398
|
6.500
|
29.688
|
14.453
|
50.000
|
50.000
|
16.211
|
13.477
|
41.406
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1372.723
|
1161.379
|
1374.786
|
1727.139
|
1826.878
|
1442.076
|
1359.622
|
1540.322
|
1459.856
|
998.694
|
1196.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.435
|
0.438
|
— |
-0.327
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.