SCN Proteipedia

Hg_chrom2_TN10mRNA_3602

Organism: Heterodera glycines Gene Locus: chr2:7540332-7541703 Feature type: polypeptide

Protein Sequence

Length: 202

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.036	0.345	0.72	1.195	1.32	2.031	0.471	0.743	0.77	0.669	1.725	0.874	1.513	0.857	1.92	1.273	0.893	0.6	0.381	0.437	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3424	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.921

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRR,RKTFAQLLEEAQRKREE,KKGKKIVAALTKTRFRKT,KEKKRRKRKIASPSKVSGAEQATKKGKKIV	—	—	—	—	—	—	0.000	—	—	0.960	0.070	0.039	0.332	0.009	0.012	0.015	0.003	0.009	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006961	1.000	1.000	Hsc_gene_21556.t1	Hsc_gene_21556.t1	—	O43257.1 Zinc finger HIT domain-containing protein 1 [Homo sapiens]	KAI1722785.1 HIT zinc finger domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006338	GO:0005575_0.946\|GO:0110165_0.944\|GO:0008150_0.930\|GO:0005622_0.895\|GO:0065007_0.892\|GO:0050789_0.887\|GO:0043226_0.864\|GO:0016020_0.862\|GO:0043229_0.838\|GO:0043227_0.783\|GO:0043231_0.759\|GO:0003674_0.689\|GO:0005488_0.689\|GO:0009987_0.684\|GO:0005634_0.680\|GO:0032501_0.664\|GO:0050794_0.662\|GO:0005515_0.649\|GO:0032502_0.632\|GO:0048856_0.632\|GO:0048518_0.581\|GO:0008152_0.575\|GO:0043170_0.575\|GO:0048522_0.571\|GO:0019222_0.569\|GO:0071840_0.568\|GO:0051239_0.566\|GO:0009058_0.562\|GO:0009059_0.562\|GO:0010467_0.562\|GO:0044237_0.562\|GO:0044249_0.562\|GO:0031323_0.561\|GO:0016043_0.560\|GO:0060255_0.557\|GO:0006139_0.547\|GO:0044238_0.547\|GO:0050793_0.546\|GO:0009889_0.538\|GO:0031326_0.538\|GO:0090304_0.537\|GO:0010556_0.536\|GO:0034654_0.536\|GO:0141187_0.536\|GO:0016070_0.533\|GO:0032774_0.532\|GO:0010468_0.530\|GO:0009893_0.529\|GO:0010604_0.526\|GO:0031325_0.523\|GO:0009891_0.517\|GO:0031328_0.515\|GO:0006351_0.514\|GO:0010557_0.510	IPR007529+162-189+\|IPR039723+11-197+	—	PF04438+162-189+HIT_zinc_finger	—	PTHR13093+11-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-105;202-202	1.000	106-201	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.634	23140.420	10.504	19.500	34.158	8.911	57.921	42.079	22.277	11.881	44.554

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	581.405	581.132	499.610	486.538	566.317	496.663	753.593	441.973	593.185	664.074	633.693

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.449	-0.393	—	0.187	-0.175	0.613	-0.272	0.913	—	—	—	—	—

No JSON data available for plots.

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