Hg_chrom2_TN10mRNA_3604
Organism: Heterodera glycines Gene Locus: chr2:7545611-7546422 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.175 | 1.361 | 0.484 | 0.367 | 0.621 | 0.955 | 0.76 | 2.394 | 1.182 | 1.006 | 1.128 | 0.626 | 1.33 | 0.818 | 1.086 | 1.444 | 1.134 | 0.806 | 1.227 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3426
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.347
|
0.057
|
0.414
|
0.060
|
0.095
|
0.095
|
0.334
|
0.081
|
0.579
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003354
|
2.000
|
1.000
|
Hsc_gene_21558.t1
|
— | — |
P80601.3 2-iminobutanoate/2-iminopropanoate deaminase [Capra hircus]
|
MCI5778040.1 RidA family protein [Bacteroidales bacterium];MDD7724178.1 RidA family protein [Bacteroidales bacterium];MDY4174362.1 RidA family protein [Bacteroidales bacterium]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.695|GO:0005575_0.683|GO:0110165_0.683|GO:0009987_0.625|GO:0005622_0.622|GO:0003674_0.607|GO:0016020_0.602|GO:0043226_0.568|GO:0043229_0.561|GO:0005737_0.539|GO:0043227_0.525|GO:0008152_0.521|GO:0043231_0.520|GO:0044238_0.518|GO:0044237_0.504
|
IPR006175+1-89_10-99+|IPR035959+3-116_4-89+
|
— |
PF01042+10-99+Endoribonuclease_L-PSP
|
— |
PTHR11803+1-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
1nq3_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
20732.560
|
10.645
|
16.500
|
23.936
|
13.298
|
50.532
|
49.468
|
17.553
|
6.383
|
52.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
midnightblue
|
285.425
|
99.037
|
268.407
|
254.983
|
220.635
|
248.798
|
311.234
|
313.829
|
146.092
|
495.320
|
345.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.209
|
1.227
|
— |
-0.241
|
— |
0.333
|
— | — | — | — | — | — | — |
No JSON data available for plots.