Hg_chrom2_TN10mRNA_3605
Organism: Heterodera glycines Gene Locus: chr2:7546793-7556286 Feature type: polypeptideProtein Sequence
Length: 1,650
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 0.987 | 0.959 | 0.982 | 1.182 | 1.01 | 0.548 | 1.242 | 1.091 | 1.245 | 0.808 | 1.141 | 1.599 | 1.026 | 1.484 | 1.463 | 0.825 | 0.79 | 1.072 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3427
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR,PTFKRPK,RKAVEKEPKKRGRPR,RRKEADKAPDQRSKKG,KKPSGRKAVEKEPKKRGRP,KRNERRKEADKAPDQRSKK,KKRNERRKEADKAPDQRSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.894
|
0.098
|
0.023
|
0.257
|
0.090
|
0.103
|
0.051
|
0.009
|
0.076
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006962
|
1.000
|
1.000
|
Hsc_gene_21559.t1
|
Hsc_gene_21560.t1
|
— | — |
KAI1730112.1 TAF RNA polymerase I subunit A domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR015943+1170-1548+|IPR036322+1133-1528+|IPR052416+29-1378+
|
— | — | — |
PTHR15052+29-1378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
774-1051
|
2.000
|
1-773;1052-1650
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
187661.220
|
7.659
|
24.500
|
27.455
|
11.697
|
50.909
|
49.091
|
15.091
|
12.364
|
48.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2994.253
|
6056.570
|
3141.905
|
2692.363
|
2444.592
|
2118.584
|
2775.676
|
2814.746
|
2532.350
|
2933.930
|
2761.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.177
|
-1.307
|
-0.114
|
-0.171
|
-0.192
|
0.400
|
0.306
|
— | — | — | — | — | — |
No JSON data available for plots.