Hg_chrom2_TN10mRNA_3606
Organism: Heterodera glycines Gene Locus: chr2:7556540-7559747 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.025 | 0.731 | 0.925 | 0.99 | 1.228 | 0.753 | 1.437 | 1.277 | 1.217 | 0.842 | 1.352 | 1.543 | 0.663 | 1.329 | 0.985 | 1.288 | 0.726 | 1.621 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.819
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.442
|
0.280
|
0.017
|
0.730
|
0.247
|
0.170
|
0.198
|
0.170
|
0.144
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003350
|
2.000
|
1.000
|
Hsc_gene_21534.t1
|
— | — |
Q21944.1 Probable glycerol kinase [Caenorhabditis elegans]
|
MDD9139403.1 glycerol kinase GlpK [Candidatus Cardinium sp.]
|
No
|
-0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016301
|
GO:0008150_0.877|GO:0005575_0.774|GO:0110165_0.767|GO:0003674_0.718|GO:0005622_0.681|GO:0009987_0.617|GO:0005737_0.615|GO:0016020_0.584|GO:0008152_0.541|GO:0043226_0.533|GO:0043229_0.518
|
IPR000577+23-260_288-522+|IPR018484+25-252+|IPR018485+300-474+|IPR043129+26-252_296-521+
|
— |
PF00370+25-252+FGGY_family_of_carbohydrate_kinases,_N-terminal_domain|PF02782+300-474+FGGY_family_of_carbohydrate_kinases,_C-terminal_domain
|
G3DSA:3.30.420.40:FF:000177+21-263+Glycerol_kinase
|
PTHR10196+24-521+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;494-522
|
1.000
|
8-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
59119.650
|
8.803
|
18.500
|
24.904
|
12.452
|
48.851
|
51.149
|
14.943
|
9.962
|
47.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
428.419
|
183.892
|
266.050
|
201.673
|
384.872
|
597.654
|
1214.843
|
500.442
|
69.270
|
566.345
|
353.313
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.301
|
— |
-0.289
|
0.902
|
0.648
|
1.035
|
-0.360
|
1.422
|
-3.135
|
— | — | — | — |
No JSON data available for plots.