Hg_chrom2_TN10mRNA_3607
Organism: Heterodera glycines Gene Locus: chr2:7619753-7621786 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 0.888 | 1.041 | 0.921 | 2.036 | 1.174 | 0.273 | 0.954 | 0.848 | 1.135 | 1.677 | 1.796 | 1.06 | 0.881 | 1.48 | 0.818 | 0.876 | 0.867 | 0.881 | 0.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3429
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKHTIVRRLNESTRKEHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.439
|
0.241
|
0.012
|
0.572
|
0.025
|
0.052
|
0.042
|
0.056
|
0.034
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006963
|
1.000
|
1.000
|
Hsc_gene_15860.t1
|
Hsc_gene_15860.t1
|
— |
A8DYY5.1 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Drosophila melanogaster]
|
KAF7632334.1 RTR1-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008420|GO:0043175
|
GO:0008150_0.936|GO:0005575_0.933|GO:0110165_0.933|GO:0005622_0.904|GO:0009987_0.895|GO:0016020_0.856|GO:0043226_0.848|GO:0043229_0.837|GO:0043227_0.799|GO:0005737_0.795|GO:0043231_0.776|GO:0005634_0.696|GO:0005829_0.645|GO:0065007_0.544|GO:0050789_0.533|GO:0050794_0.513|GO:0003674_0.509
|
IPR007308+52-154_56-135+|IPR038534+7-170+|IPR039693+19-232+
|
— |
PF04181+56-135+Rtr1/RPAP2_family
|
— |
PTHR14732+19-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;171-262
|
1.000
|
2-170
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
30620.040
|
7.604
|
3.500
|
38.168
|
8.015
|
57.634
|
42.366
|
20.229
|
17.939
|
41.603
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
841.383
|
662.527
|
691.449
|
847.320
|
951.728
|
838.275
|
934.810
|
819.246
|
954.414
|
810.733
|
872.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.168
|
0.218
|
0.402
|
0.136
|
— | — | — |
0.333
|
— | — | — | — | — |
No JSON data available for plots.