Hg_chrom2_TN10mRNA_3609
Organism: Heterodera glycines Gene Locus: chr2:7625198-7631603 Feature type: polypeptideProtein Sequence
Length: 1,183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 0.865 | 0.876 | 1.049 | 0.845 | 0.672 | 0.845 | 1.437 | 1.352 | 1.542 | 0.628 | 1.094 | 2.231 | 0.715 | 1.19 | 1.594 | 0.901 | 0.73 | 1.3 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3431
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.163
|
0.014
|
0.524
|
0.189
|
0.308
|
0.214
|
0.124
|
0.183
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003358
|
1.000
|
2.000
|
Hsc_gene_15862.t1;Hsc_gene_15862.t2
|
Hsc_gene_15862.t1;Hsc_gene_15862.t2
|
— | — |
KAI1728794.1 putative WD repeat-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.894|GO:0008150_0.790|GO:0110165_0.759|GO:0009987_0.735|GO:0003674_0.720|GO:0016020_0.687|GO:0005622_0.668|GO:0005737_0.629|GO:0008152_0.623|GO:0044238_0.604|GO:0005488_0.600|GO:0044237_0.596|GO:0009058_0.584|GO:0043170_0.575|GO:0005515_0.568|GO:0044249_0.563|GO:0009059_0.547|GO:0006139_0.535|GO:0010467_0.531|GO:0043412_0.528|GO:0034654_0.527|GO:0090304_0.524|GO:0016070_0.518|GO:0141187_0.518|GO:0032774_0.516
|
IPR001680+229-268_232-268_236-277_271-310+|IPR015943+184-346_840-1120+|IPR019775+255-269+|IPR036322+197-338_567-1103+|IPR051973+43-315+
|
SM00320+229-268_271-310+
|
PF00400+232-268+WD_domain,_G-beta_repeat
|
— |
PTHR14344+43-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
132311.790
|
7.521
|
18.000
|
22.739
|
13.779
|
45.731
|
54.269
|
12.849
|
9.890
|
49.197
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
1718.078
|
2329.822
|
2027.891
|
1571.779
|
1175.720
|
1717.428
|
1457.799
|
1531.180
|
828.697
|
2465.711
|
1764.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.431
|
-0.705
|
-0.258
|
-0.451
|
0.561
|
-0.228
|
-0.271
|
— | — | — | — | — | — |
No JSON data available for plots.