Hg_chrom2_TN10mRNA_3611
Organism: Heterodera glycines Gene Locus: chr2:7633143-7636153 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.995 | 0.655 | 0.544 | 1.051 | 0.809 | 0.858 | 1.577 | 1.001 | 1.339 | 1.058 | 0.795 | 1.689 | 1.256 | 1.057 | 1.062 | 0.702 | 0.956 | 0.693 | 1.126 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3433
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.138
|
0.831
|
0.072
|
0.154
|
0.159
|
0.138
|
0.065
|
0.082
|
0.148
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006965
|
1.000
|
1.000
|
Hsc_gene_15863.t1
|
Hsc_gene_15863.t1
|
— |
Q9R112.3 Sulfide:quinone oxidoreductase, mitochondrial [Mus musculus]
|
KAI1711796.1 pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.859|GO:0110165_0.858|GO:0016020_0.798|GO:0005622_0.789|GO:0043226_0.760|GO:0043229_0.752|GO:0005737_0.735|GO:0043227_0.723|GO:0043231_0.719|GO:0008150_0.643|GO:0003674_0.629|GO:0009987_0.582|GO:0005739_0.522|GO:0008152_0.513
|
IPR015904+9-437+|IPR023753+16-128+|IPR036188+14-130_136-276+
|
— |
PF07992+16-128+Pyridine_nucleotide-disulphide_oxidoreductase
|
G3DSA:3.50.50.60:FF:000034+133-276+sulfide:quinone_oxidoreductase,_mitochondrial
|
PTHR10632+9-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
49724.030
|
9.266
|
17.000
|
25.225
|
13.964
|
44.369
|
55.631
|
15.315
|
9.910
|
48.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
989.357
|
2534.464
|
1047.033
|
1054.230
|
1116.898
|
984.997
|
1110.431
|
1360.396
|
868.425
|
223.949
|
500.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.505
|
-1.403
|
— | — |
-0.166
|
0.182
|
0.361
|
— |
1.831
|
— |
2.453
|
— | — |
No JSON data available for plots.