Hg_chrom2_TN10mRNA_3613
Organism: Heterodera glycines Gene Locus: chr2:7640076-7644977 Feature type: polypeptideProtein Sequence
Length: 899
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 1.268 | 0.647 | 0.844 | 1.131 | 1.283 | 0.9 | 1.057 | 1.038 | 1.172 | 0.978 | 1.701 | 1.545 | 0.984 | 1.226 | 0.874 | 0.675 | 1.011 | 0.77 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3435
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.123
|
0.044
|
0.509
|
0.213
|
0.187
|
0.100
|
0.002
|
0.232
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006967
|
1.000
|
1.000
|
Hsc_gene_15865.t1
|
Hsc_gene_15865.t1
|
— | — |
KAH7728869.1 piwi domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0008150_0.871|GO:0005575_0.812|GO:0110165_0.801|GO:0009987_0.768|GO:0003674_0.742|GO:0005622_0.740|GO:0043226_0.688|GO:0065007_0.664|GO:0043229_0.659|GO:0005488_0.658|GO:0016020_0.653|GO:0050789_0.647|GO:0008152_0.633|GO:0050794_0.624|GO:0043170_0.586|GO:0005737_0.579|GO:0043227_0.569|GO:0044237_0.553|GO:0043231_0.549|GO:0009058_0.547|GO:0044249_0.525|GO:0009059_0.506|GO:0019222_0.504
|
IPR003100+262-370_281-378+|IPR003165+532-858_534-857_557-858+|IPR012337+531-855+|IPR036085+276-403+|IPR036397+603-884+
|
SM00950+532-858+
|
PF02170+281-378+PAZ_domain|PF02171+534-857+Piwi_domain
|
— |
PTHR22891+30-865+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;897-899
|
1.000
|
18-896
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
100807.820
|
8.922
|
28.500
|
24.917
|
11.123
|
45.606
|
54.394
|
14.572
|
10.345
|
48.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
4867.292
|
3135.003
|
3901.302
|
3223.062
|
3766.881
|
5427.734
|
3150.483
|
7395.608
|
6839.109
|
4915.042
|
5739.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.097
|
-0.167
|
0.193
|
0.542
|
-0.775
|
0.342
|
-1.090
|
— | — | — | — | — |
No JSON data available for plots.