Hg_chrom2_TN10mRNA_3614
Organism: Heterodera glycines Gene Locus: chr2:7646963-7648734 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 1.622 | 0.846 | 1.069 | 1.55 | 0.696 | 0.877 | 1.357 | 1.12 | 1.676 | 0.998 | 1.596 | 1.184 | 0.373 | 1.661 | 1.44 | 0.508 | 0.411 | 0.894 | 0.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3436
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
15-35
|
0.997
|
5-39
|
0.991
|
— | — |
0.000
|
— | — |
0.645
|
0.116
|
0.076
|
0.561
|
0.156
|
0.113
|
0.047
|
0.035
|
0.112
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006968
|
1.000
|
1.000
|
Hsc_gene_15866.t1
|
Hsc_gene_15866.t1
|
— |
Q6YYC0.1 Zinc finger CCCH domain-containing protein 55 [Oryza sativa Japonica Group]
|
— |
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0046872
|
GO:0003674_0.665|GO:0005488_0.654|GO:0005575_0.643|GO:0110165_0.635|GO:0005622_0.608|GO:0008150_0.601|GO:0043226_0.559|GO:0009987_0.547|GO:0097159_0.540|GO:0003676_0.532|GO:0043229_0.532
|
IPR000571+35-62_35-63_84-111_85-110+|IPR000626+179-246+|IPR029071+173-247+|IPR032297+81-125+|IPR036855+33-66_86-109+
|
SM00356+35-62_85-110+
|
PF16131+81-125+Torus_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
114-166
|
2.000
|
1-113;167-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
29233.230
|
7.881
|
5.500
|
31.395
|
8.527
|
54.264
|
45.736
|
17.442
|
13.953
|
44.574
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
386.849
|
301.196
|
373.749
|
454.299
|
557.478
|
434.068
|
652.872
|
315.109
|
315.713
|
297.392
|
305.244
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.456
|
0.391
|
0.263
|
-0.346
|
0.599
|
-0.566
|
1.193
|
— | — | — | — | — |
No JSON data available for plots.