Hg_chrom2_TN10mRNA_3615
Organism: Heterodera glycines Gene Locus: chr2:7652256-7654752 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.764 | 0.597 | 0.354 | 0.548 | 1.422 | 1.027 | 0.821 | 1.415 | 1.582 | 0.342 | 2.295 | 2.225 | 0.632 | 0.67 | 1.115 | 1.178 | 1.027 | 1.422 | 0.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3437
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.070
|
0.124
|
0.008
|
0.175
|
0.410
|
0.772
|
0.507
|
0.021
|
0.648
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006969
|
1.000
|
1.000
|
Hsc_gene_15867.t1
|
Hsc_gene_15867.t1
|
— |
P60815.1 Heme transporter FLVCR2 [Rattus norvegicus]
|
KAI1731627.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.888|GO:0006810_0.797|GO:0051179_0.797|GO:0051234_0.797|GO:0055085_0.758|GO:0005575_0.740|GO:0110165_0.740|GO:0003674_0.737|GO:0005215_0.727|GO:0022857_0.727|GO:0016020_0.721|GO:0071944_0.711|GO:0005886_0.703|GO:0071705_0.654|GO:0015695_0.557|GO:0015871_0.532|GO:0015101_0.529|GO:0015220_0.516|GO:0005622_0.502|GO:0005737_0.502
|
IPR011701+76-425+|IPR020846+61-466+|IPR036259+55-471_60-464+|IPR049680+37-480+
|
— |
PF07690+76-425+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000184+59-463+Feline_leukemia_virus_subgroup_C_receptor-related_protein_1
|
PTHR10924+37-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;472-487
|
1.000
|
55-471
|
8qd0_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
53632.210
|
6.295
|
-1.000
|
13.758
|
14.168
|
37.577
|
62.423
|
7.187
|
6.571
|
49.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
929.255
|
268.744
|
753.047
|
1333.973
|
764.598
|
1862.744
|
1315.189
|
1533.218
|
444.462
|
795.325
|
644.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.256
|
2.174
|
0.934
|
-0.835
|
1.299
|
-0.491
|
-0.381
|
— | — | — | — | — | — |
No JSON data available for plots.