SCN Proteipedia

Hg_chrom2_TN10mRNA_3618

Organism: Heterodera glycines Gene Locus: chr2:7677325-7680090 Feature type: polypeptide

Protein Sequence

Length: 560

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.664	1.121	1.201	0.369	1.458	0.916	0.914	0.982	0.992	1.11	1.732	1.261	1.24	0.652	1.421	0.485	0.966	0.812	0.824	0.893	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3439	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.671

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RISKRNK,KKMKEMEQKTTKTKRRKKE,RRKKEKDTENGGTNREKPK,RKFTDKTQNDFLTDIKKFK,KRKGAEEKRKSANNDKGKGEKRKTQNEQKGRIGNR	—	—	—	—	—	—	0.000	—	—	0.823	0.133	0.023	0.366	0.041	0.036	0.043	0.005	0.043	0.115

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003359	2.000	1.000	Hsc_gene_15873.t1	Hsc_gene_15873.t1	—	O88554.3 Poly [ADP-ribose] polymerase 2 [Mus musculus]	KAI1706408.1 poly(ADP-ribose) polymerase catalytic domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003950	GO:0008150_0.916\|GO:0003674_0.799\|GO:0009987_0.767\|GO:0005575_0.738\|GO:0110165_0.735\|GO:0008152_0.727\|GO:0044238_0.716\|GO:0043170_0.700\|GO:0005622_0.676\|GO:0003824_0.659\|GO:0050896_0.653\|GO:0043226_0.651\|GO:0016020_0.645\|GO:0043229_0.625\|GO:0051716_0.619\|GO:0006139_0.611\|GO:0016740_0.607\|GO:0006950_0.600\|GO:0140096_0.596\|GO:0090304_0.589\|GO:0016757_0.578\|GO:0033554_0.574\|GO:0003950_0.568\|GO:0016763_0.568\|GO:1990404_0.568\|GO:0043227_0.567\|GO:0006974_0.557\|GO:0043231_0.554\|GO:0065007_0.519\|GO:0050789_0.502	IPR004102+202-319_204-318+\|IPR008893+69-169_81-156_81-163+\|IPR012317+321-560_343-458_459-553+\|IPR036616+187-330_204-331+\|IPR036930+54-173+\|IPR050800+10-551+	SM00773+81-163+	PF00644+343-458_459-553+Poly(ADP-ribose)_polymerase_catalytic_domain\|PF02877+204-318+Poly(ADP-ribose)_polymerase,_regulatory_domain\|PF05406+81-156+WGR_domain	—	PTHR10459+10-551+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-58;366-416	2.000	59-365;417-560	6f5f_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.778	64385.430	9.739	22.500	35.714	10.536	53.393	46.607	20.357	15.357	43.929

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1329.760	1689.712	805.623	807.997	645.886	612.055	652.530	440.374	1071.875	2893.478	2112.791

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.298	-1.201	—	-0.354	—	—	-0.583	0.711	—	—	—	—	—

No JSON data available for plots.

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