Hg_chrom2_TN10mRNA_3620
Organism: Heterodera glycines Gene Locus: chr2:7682307-7687344 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.218 | 0.974 | 0.42 | 1.238 | 1.249 | 0.653 | 1.583 | 1.326 | 1.267 | 0.83 | 1.72 | 1.218 | 0.632 | 1.293 | 0.957 | 0.779 | 1.015 | 0.75 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3441
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRIR,LGEV,RRWSLKRNNKLRRDSRR,RRQLLSGFTTPAGRKNFR
|
49-74
|
0.996
|
32-88
|
0.990
|
— | — |
0.000
|
— | — |
0.289
|
0.190
|
0.014
|
0.619
|
0.172
|
0.277
|
0.267
|
0.027
|
0.318
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003361
|
2.000
|
1.000
|
Hsc_gene_15875.t2
|
Hsc_gene_15875.t1;Hsc_gene_15875.t2
|
— |
P91119.3 Probable 3',5'-cyclic phosphodiesterase pde-5 [Caenorhabditis elegans]
|
KAI1713530.1 3'5'-cyclic nucleotide phosphodiesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004114|GO:0005515|GO:0007165|GO:0008081
|
GO:0008150_0.865|GO:0005575_0.824|GO:0110165_0.821|GO:0009987_0.745|GO:0003674_0.663|GO:0005622_0.640|GO:0065007_0.630|GO:0050789_0.612|GO:0050896_0.540|GO:0050794_0.529|GO:0003824_0.517
|
IPR002073+484-802_558-785+|IPR003018+290-465_291-455+|IPR003607+556-721_558-730+|IPR023088+554-567_582-595_596-611_622-638_703-716_720-736+|IPR023174+596-607+|IPR029016+265-470+|IPR036971+479-807+
|
SM00065+290-465+|SM00471+556-721+
|
PF00233+558-785+3'5'-cyclic_nucleotide_phosphodiesterase|PF01590+291-455+GAF_domain
|
G3DSA:1.10.1300.10:FF:000003+482-802+Phosphodiesterase|G3DSA:3.30.450.40:FF:000067+264-470+Phosphodiesterase
|
PTHR11347+196-814+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10;789-821
|
1.000
|
11-788
|
7qq4_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
93389.370
|
6.833
|
5.000
|
27.771
|
11.571
|
49.330
|
50.670
|
14.982
|
12.789
|
46.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
87.797
|
199.148
|
313.190
|
69.276
|
24.065
|
21.163
|
17.046
|
98.030
|
117.345
|
17.884
|
60.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.423
|
-1.661
|
-2.068
|
-1.560
|
— | — |
2.111
|
-2.381
|
— | — | — | — | — |
No JSON data available for plots.