Hg_chrom2_TN10mRNA_3621
Organism: Heterodera glycines Gene Locus: chr2:7688691-7690611 Feature type: polypeptideProtein Sequence
Length: 420
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 1.329 | 1.039 | 1.149 | 0.952 | 0.549 | 0.595 | 1.31 | 1.429 | 1.158 | 0.649 | 1.401 | 2.183 | 0.962 | 1.895 | 0.646 | 0.585 | 0.83 | 1.465 | 0.91 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3442
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
nucleus
|
FKRR,KRRS
|
— | — | — | — |
1-20
|
0.823
|
0.875
|
1.000
|
1.000
|
0.152
|
0.065
|
0.034
|
0.179
|
0.593
|
0.312
|
0.662
|
0.455
|
0.251
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003362
|
2.000
|
1.000
|
Hsc_gene_15876.t1
|
Hsc_gene_15876.t1
|
— |
Q99JB3.1 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [Rattus norvegicus]
|
KAF7635381.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.878|GO:0003674_0.814|GO:0003824_0.690|GO:0005575_0.663|GO:0110165_0.663|GO:0016740_0.639|GO:0016757_0.611|GO:0016758_0.610|GO:0008417_0.600|GO:0008152_0.596|GO:0016020_0.595|GO:0009987_0.589|GO:0071944_0.542|GO:0005622_0.529|GO:0005886_0.526|GO:0043226_0.506
|
IPR001503+28-343_161-333+|IPR031481+26-121+|IPR038577+104-306+
|
— |
PF00852+161-333+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+26-121+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+99-306+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+28-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
48922.410
|
8.583
|
14.500
|
27.619
|
15.476
|
43.571
|
56.429
|
16.190
|
11.429
|
45.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
72.448
|
41.916
|
92.034
|
45.472
|
18.234
|
4.379
|
3.448
|
20.935
|
309.406
|
0.000
|
132.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
— |
-0.909
|
-1.355
|
-2.040
|
— |
2.151
|
-2.459
|
7.329
|
— | — | — | — |