Hg_chrom2_TN10mRNA_3624
Organism: Heterodera glycines Gene Locus: chr2:7695265-7696941 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.35 | 0.959 | 1.274 | 0.967 | 0.474 | 0.565 | 1.319 | 1.524 | 1.212 | 0.72 | 1.397 | 2.272 | 0.812 | 1.939 | 0.641 | 0.606 | 0.8 | 1.421 | 0.931 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3445
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
nucleus
|
FKRR,KRRS
|
— | — | — | — | — |
0.767
|
0.366
|
1.000
|
— |
0.151
|
0.073
|
0.025
|
0.192
|
0.622
|
0.311
|
0.681
|
0.424
|
0.228
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003362
|
2.000
|
1.000
|
Hsc_gene_15876.t1
|
— | — |
Q99JB3.1 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [Rattus norvegicus]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.871|GO:0003674_0.807|GO:0003824_0.689|GO:0005575_0.669|GO:0110165_0.669|GO:0016740_0.640|GO:0016757_0.611|GO:0016758_0.610|GO:0008417_0.599|GO:0016020_0.592|GO:0009987_0.589|GO:0008152_0.586|GO:0071944_0.547|GO:0005622_0.531|GO:0005886_0.530|GO:0043226_0.508
|
IPR001503+72-302_120-292+|IPR038577+53-265+
|
— |
PF00852+120-292+Glycosyltransferase_family_10_(fucosyltransferase)_C-term
|
— |
PTHR48350+72-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
44414.440
|
8.914
|
17.000
|
27.968
|
15.831
|
43.799
|
56.201
|
16.887
|
11.082
|
44.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
28.412
|
20.610
|
71.852
|
29.394
|
6.917
|
3.499
|
2.650
|
16.693
|
83.042
|
5.167
|
38.542
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.568
|
— |
-1.178
|
-2.132
|
— | — |
2.145
|
-2.508
|
4.397
|
— | — | — | — |