SCN Proteipedia

Hg_chrom2_TN10mRNA_3625

Organism: Heterodera glycines Gene Locus: chr2:7698288-7702639 Feature type: polypeptide

Protein Sequence

Length: 805

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.852	1.127	0.971	0.428	1.242	1.242	0.651	1.615	1.297	1.259	0.847	1.754	1.242	0.621	1.318	0.941	0.794	1.035	0.764	0.913	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3446	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.688

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRIR,LGEV,RRWSLKRNNKLRRDSRR,RRQLLSGFTTPAGRKNFR	49-74	0.996	32-88	0.990	—	—	0.000	—	—	0.292	0.187	0.014	0.626	0.172	0.268	0.265	0.030	0.326	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003361	2.000	1.000	Hsc_gene_15875.t2	Hsc_gene_15875.t1;Hsc_gene_15875.t2	—	P91119.3 Probable 3',5'-cyclic phosphodiesterase pde-5 [Caenorhabditis elegans]	KAH7731293.1 cAMP 3,5-cyclic phosphodiesterase [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004114\|GO:0005515\|GO:0007165\|GO:0008081	GO:0008150_0.865\|GO:0005575_0.822\|GO:0110165_0.820\|GO:0009987_0.747\|GO:0003674_0.667\|GO:0005622_0.641\|GO:0065007_0.628\|GO:0050789_0.609\|GO:0050896_0.540\|GO:0050794_0.527\|GO:0003824_0.522	IPR002073+468-786_542-769+\|IPR003018+290-449_291-439+\|IPR003607+540-705_542-714+\|IPR023088+538-551_566-579_580-595_606-622_687-700_704-720+\|IPR023174+580-591+\|IPR029016+265-454+\|IPR036971+463-791+	SM00065+290-449+\|SM00471+540-705+	PF00233+542-769+3'5'-cyclic_nucleotide_phosphodiesterase\|PF01590+291-439+GAF_domain	G3DSA:1.10.1300.10:FF:000003+466-786+Phosphodiesterase\|G3DSA:3.30.450.40:FF:000067+264-454+Phosphodiesterase	PTHR11347+196-798+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-10;773-805	1.000	11-772	7qq4_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.570	91708.580	6.982	7.000	28.075	11.801	49.193	50.807	15.280	12.795	45.714

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	86.114	181.733	258.929	57.030	14.631	14.037	18.970	94.924	176.809	4.048	78.088

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.281	-1.809	-2.074	-1.988	—	—	2.654	-2.181	6.166	—	—	—	—

No JSON data available for plots.

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