SCN Proteipedia

Hg_chrom2_TN10mRNA_3629

Organism: Heterodera glycines Gene Locus: chr2:7710352-7714429 Feature type: polypeptide

Protein Sequence

Length: 519

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.963	1.344	1.016	0.199	1.83	1.433	0.459	0.771	1.028	0.989	1.343	1.587	0.749	1.0	1.652	1.073	0.79	0.584	0.741	0.34	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3450	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.891

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKPQRGPLMMKTLRMLKKQRR	—	—	—	—	—	—	0.000	—	—	0.938	0.067	0.009	0.294	0.015	0.032	0.053	0.004	0.045	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006970	1.000	1.000	Hsc_gene_15871.t1	Hsc_gene_15871.t1	—	Q9VCP0.1 Transcription elongation factor B polypeptide 3 [Drosophila melanogaster]	KAI1723369.1 RNA polymerase II transcription factor SIII (Elongin) subunit A domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0005634\|GO:0006368\|GO:0070449	GO:0008150_0.943\|GO:0009987_0.903\|GO:0005575_0.835\|GO:0110165_0.832\|GO:0005622_0.803\|GO:0008152_0.790\|GO:0043170_0.790\|GO:0006139_0.779\|GO:0044238_0.779\|GO:0009058_0.773\|GO:0009059_0.773\|GO:0044237_0.773\|GO:0044249_0.773\|GO:0010467_0.770\|GO:0090304_0.768\|GO:0034654_0.766\|GO:0141187_0.756\|GO:0016020_0.751\|GO:0043226_0.751\|GO:0016070_0.750\|GO:0032774_0.750\|GO:0043229_0.737\|GO:0006351_0.714\|GO:0006366_0.698\|GO:0043227_0.680\|GO:0043231_0.651\|GO:0005634_0.641\|GO:0065007_0.568\|GO:0050789_0.554\|GO:0031974_0.552\|GO:0031981_0.552\|GO:0043233_0.552\|GO:0070013_0.552\|GO:0006354_0.538\|GO:0050794_0.534\|GO:0032991_0.532\|GO:0005654_0.502	IPR003617+7-79+\|IPR010684+306-418+\|IPR017923+12-80_30-75+\|IPR035441+1-93_20-90+\|IPR051870+21-502+	SM00509+7-79+	PF06881+306-418+RNA_polymerase_II_transcription_factor_SIII_(Elongin)_subunit_A\|PF08711+30-75+TFIIS_helical_bundle-like_domain	—	PTHR15141+21-502+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-274;407-519	1.000	275-406	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.723	59265.580	8.250	6.000	35.067	6.358	58.767	41.233	18.497	16.570	45.472

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2080.928	2104.624	1578.898	1128.108	1389.959	2375.018	2208.742	2173.171	3175.347	1863.107	2425.495

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.645	-1.037	-0.376	0.270	0.788	—	-0.235	—	—	—	—	—	—

No JSON data available for plots.

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