Hg_chrom2_TN10mRNA_3632
Organism: Heterodera glycines Gene Locus: chr2:7720898-7731179 Feature type: polypeptideProtein Sequence
Length: 2,145
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 1.019 | 0.746 | 0.82 | 1.119 | 1.279 | 0.533 | 1.515 | 1.14 | 1.89 | 0.678 | 1.152 | 1.981 | 0.888 | 1.085 | 1.225 | 0.657 | 0.735 | 1.255 | 0.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRDKTIIGQRQKKKTE,KKKTEEGADQCEKKDKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.525
|
0.101
|
0.007
|
0.526
|
0.223
|
0.284
|
0.204
|
0.038
|
0.162
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006973
|
1.000
|
1.000
|
Hsc_gene_15881.t1
|
Hsc_gene_15881.t1;Hsc_gene_15883.t1
|
— | — |
KAI1725744.1 huntingtin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0005575_0.922|GO:0009987_0.921|GO:0110165_0.914|GO:0065007_0.895|GO:0050789_0.882|GO:0016020_0.875|GO:0050794_0.867|GO:0005622_0.866|GO:0003674_0.845|GO:0071944_0.841|GO:0005886_0.833|GO:0051179_0.828|GO:0043226_0.823|GO:0043227_0.812|GO:0006810_0.810|GO:0051234_0.810|GO:0043229_0.808|GO:0005737_0.789|GO:0043231_0.789|GO:0016043_0.781|GO:0071840_0.781|GO:0005488_0.770|GO:0051641_0.740|GO:0006996_0.718|GO:0032879_0.712|GO:0033036_0.708|GO:0070727_0.706|GO:0007010_0.689|GO:0007017_0.689|GO:0000226_0.683|GO:0098590_0.637|GO:0030054_0.633|GO:0042995_0.620|GO:0120025_0.620|GO:0043228_0.603|GO:0045202_0.603|GO:0050896_0.603|GO:0043232_0.598|GO:0031982_0.594|GO:0043005_0.594|GO:0051716_0.584|GO:0031410_0.575|GO:0097708_0.575|GO:0030424_0.572|GO:0032501_0.572|GO:0048518_0.556|GO:0007154_0.552|GO:0008152_0.552|GO:0023052_0.549|GO:0005515_0.543|GO:0007165_0.543|GO:0043170_0.541|GO:0044237_0.540|GO:0044238_0.540|GO:0048522_0.539|GO:0019222_0.538|GO:0031323_0.525|GO:0048519_0.525|GO:0080090_0.524|GO:0060255_0.517|GO:0048523_0.514|GO:0010646_0.502|GO:0019538_0.502|GO:0023051_0.502|GO:0005773_0.500|GO:0003824_0.498|GO:0065008_0.498|GO:0012505_0.494|GO:0003008_0.492|GO:0051649_0.490|GO:0030030_0.486|GO:0120036_0.486|GO:0071705_0.481|GO:0044085_0.479|GO:0008104_0.478|GO:0036211_0.478|GO:0043412_0.478|GO:0046907_0.476|GO:0008219_0.474|GO:0009628_0.474|GO:0042592_0.473|GO:0012501_0.471|GO:0016192_0.471|GO:0022607_0.471|GO:0032991_0.471|GO:0016740_0.469|GO:0051128_0.469|GO:0043067_0.468|GO:0006915_0.467|GO:0042981_0.467|GO:0060341_0.467|GO:0051246_0.466|GO:0065009_0.466|GO:0006793_0.465|GO:0043069_0.465|GO:0050790_0.465|GO:0050877_0.465|GO:0006796_0.464|GO:0031344_0.464|GO:0048878_0.464|GO:0120035_0.463|GO:0043066_0.462|GO:0007018_0.460|GO:0030031_0.460|GO:0120031_0.460|GO:0140096_0.460|GO:0048193_0.459|GO:0051640_0.459|GO:0051656_0.459|GO:0036094_0.458|GO:0097159_0.458|GO:0033365_0.456|GO:0051130_0.456|GO:0070925_0.456|GO:0007610_0.455|GO:0010256_0.455|GO:0031399_0.455|GO:0043167_0.455|GO:0044087_0.455|GO:0010970_0.454|GO:0016310_0.454|GO:0019220_0.454|GO:0030705_0.454|GO:0042325_0.454|GO:0051174_0.454|GO:0099111_0.454|GO:0001932_0.453|GO:0006468_0.453|GO:0022411_0.453|GO:0051648_0.453|GO:0051650_0.453|GO:0006903_0.452|GO:0031503_0.452|GO:0033043_0.452|GO:0050801_0.452|GO:0050890_0.452|GO:0098771_0.452|GO:0001578_0.451|GO:0005929_0.451|GO:0007611_0.451|GO:0030990_0.451|GO:0035082_0.451|GO:0035735_0.451|GO:0042073_0.451|GO:0044782_0.451|GO:0048199_0.451|GO:0055080_0.451|GO:0060271_0.451|GO:0061512_0.451|GO:0097712_0.451|GO:1905349_0.451|GO:0007612_0.449|GO:0031346_0.449|GO:1902115_0.449|GO:0004672_0.448|GO:0016301_0.448|GO:0016772_0.448|GO:0016773_0.448|GO:0043549_0.448|GO:0044089_0.448|GO:0045859_0.448|GO:0051338_0.448|GO:0060491_0.448|GO:0120032_0.448|GO:0000166_0.444|GO:0004674_0.444|GO:0004690_0.444|GO:0004691_0.444|GO:0010638_0.444|GO:0017076_0.444|GO:0030551_0.444|GO:0030552_0.444|GO:0030554_0.444|GO:0032553_0.444|GO:0032555_0.444|GO:0032559_0.444|GO:0043168_0.444|GO:0045724_0.444|GO:0047496_0.444|GO:0071900_0.444|GO:0072384_0.444|GO:0097367_0.444|GO:0099518_0.444|GO:0120034_0.444|GO:1901265_0.444|GO:1901363_0.444|GO:1902017_0.444|GO:1902117_0.444|GO:2000479_0.444|GO:0005634_0.443|GO:0005856_0.409|GO:0005783_0.405|GO:0036477_0.397|GO:0030425_0.396|GO:0097447_0.396|GO:0031974_0.393|GO:0043233_0.393|GO:0070013_0.389|GO:0031981_0.385|GO:0015630_0.381|GO:0005654_0.379|GO:0048471_0.373|GO:0005815_0.371|GO:0005814_0.366|GO:0016234_0.357
|
IPR011989+35-326+|IPR016024+74-330+|IPR028426+78-634+|IPR048411+86-237+|IPR048413+1398-1544_1573-1798+
|
— |
PF20926+86-237+Huntingtin,_N-terminal_HEAT_1|PF20927+1398-1544_1573-1798+Huntingtin,_C-terminal_HEAT
|
— |
PTHR10170+78-634+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;484-536
|
2.000
|
7-483;537-2145
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
243125.290
|
6.771
|
10.500
|
23.636
|
12.821
|
45.594
|
54.406
|
12.821
|
10.816
|
44.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1824.738
|
2325.692
|
2382.532
|
1444.840
|
977.570
|
1116.397
|
1319.121
|
1444.850
|
2108.590
|
2272.659
|
2202.344
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.195
|
-0.824
|
-0.612
|
-0.596
|
0.206
|
0.249
|
0.264
|
— | — | — | — | — | — |
No JSON data available for plots.