Hg_chrom2_TN10mRNA_3633
Organism: Heterodera glycines Gene Locus: chr2:7731590-7735313 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 1.33 | 0.693 | 0.896 | 1.82 | 1.155 | 0.516 | 1.3 | 0.655 | 1.569 | 0.867 | 1.937 | 1.155 | 0.533 | 1.662 | 1.312 | 0.483 | 0.814 | 0.933 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3454
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKQQEVSEEREQNATLRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.228
|
0.014
|
0.586
|
0.122
|
0.551
|
0.437
|
0.021
|
0.187
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006974
|
1.000
|
1.000
|
Hsc_gene_15884.t1
|
Hsc_gene_15884.t1
|
— |
Q96T51.2 RUN and FYVE domain-containing protein 1 [Homo sapiens]
|
KAI1726303.1 FYVE zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.938|GO:0110165_0.938|GO:0005622_0.885|GO:0008150_0.840|GO:0009987_0.797|GO:0005737_0.712|GO:0016020_0.693|GO:0065007_0.643|GO:0043226_0.633|GO:0050789_0.632|GO:0071944_0.612|GO:0043229_0.607|GO:0050794_0.605|GO:0005886_0.603|GO:0003674_0.586|GO:0005488_0.557|GO:0043227_0.536
|
IPR000306+483-550_488-549+|IPR004012+61-196_70-194_132-194+|IPR011011+487-552+|IPR013083+478-556+|IPR017455+491-549+|IPR037213+27-206_32-198+|IPR047335+24-265+
|
SM00064+483-550+|SM00593+132-194+
|
PF01363+488-549+FYVE_zinc_finger|PF02759+70-194+RUN_domain
|
— |
PTHR45956+24-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
250-443
|
2.000
|
1-249;444-577
|
2yqm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
66070.090
|
6.766
|
2.500
|
31.196
|
9.012
|
53.553
|
46.447
|
16.464
|
14.731
|
43.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1383.619
|
1144.574
|
991.667
|
1064.050
|
823.517
|
782.130
|
1001.942
|
970.870
|
2803.142
|
1408.945
|
2006.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.436
|
-0.242
|
0.210
|
-0.402
|
— |
0.367
|
— | — | — | — | — | — | — |
No JSON data available for plots.