Hg_chrom2_TN10mRNA_3634
Organism: Heterodera glycines Gene Locus: chr2:7735617-7737742 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.64 | 0.991 | 0.995 | 1.656 | 1.644 | 0.649 | 1.763 | 0.926 | 0.996 | 0.874 | 1.697 | 1.335 | 0.74 | 1.243 | 1.236 | 0.368 | 0.874 | 0.493 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3455
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRP,RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.968
|
0.071
|
0.021
|
0.199
|
0.014
|
0.017
|
0.028
|
0.008
|
0.010
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006975
|
1.000
|
1.000
|
Hsc_gene_15885.t1
|
Hsc_gene_11860.t1;Hsc_gene_15885.t1
|
— | — |
GMT11034.1 hypothetical protein PFISCL1PPCAC_2331, partial [Pristionchus fissidentatus]
|
KAI9281838
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000270+11-77+
|
— |
PF00564+11-77+PB1_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
92-223
|
2.000
|
1-91;224-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
35598.780
|
5.607
|
-5.500
|
30.769
|
10.577
|
55.128
|
44.872
|
15.385
|
15.385
|
46.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
413.034
|
598.683
|
620.467
|
455.836
|
433.915
|
448.948
|
689.059
|
472.348
|
424.863
|
93.653
|
235.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.177
|
-0.530
|
-0.336
|
— | — |
0.628
|
— |
0.687
|
— | — | — | — | — |
No JSON data available for plots.