Hg_chrom2_TN10mRNA_3637
Organism: Heterodera glycines Gene Locus: chr2:7742799-7746066 Feature type: polypeptideProtein Sequence
Length: 693
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 0.873 | 1.233 | 0.697 | 1.708 | 0.74 | 0.601 | 0.289 | 1.251 | 1.502 | 1.224 | 1.613 | 0.922 | 0.666 | 1.443 | 0.742 | 0.875 | 0.765 | 0.555 | 0.637 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15888
|
— |
30-Not_Clustered
|
0.681
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— |
LGEV
|
— | — | — | — |
1-32
|
— |
0.561
|
— |
0.000
|
0.289
|
0.169
|
0.037
|
0.276
|
0.224
|
0.147
|
0.140
|
0.018
|
0.206
|
0.721
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006978
|
1.000
|
1.000
|
Hsc_gene_15888.t1
|
Hsc_gene_15888.t1
|
— | — |
KAI1711318.1 shK domain-like domain-containing protein [Ditylenchus destructor]
|
WP_227445183
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+610-645_610-646_653-691_653-692+
|
SM00254+610-646_653-692+
|
PF01549+610-645_653-691+ShK_domain-like
|
— |
PTHR21724+609-691+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
560-608
|
2.000
|
1-559;609-693
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
78338.820
|
5.106
|
-11.000
|
32.756
|
6.782
|
49.928
|
50.072
|
15.729
|
17.027
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
361.004
|
277.007
|
183.673
|
644.449
|
254.728
|
49.647
|
62.974
|
38.644
|
298.828
|
788.602
|
578.699
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.823
|
1.081
|
1.919
|
-1.372
|
-2.345
|
— | — |
0.847
|
— | — | — | — | — |