Hg_chrom2_TN10mRNA_3640
Organism: Heterodera glycines Gene Locus: chr2:7752389-7755307 Feature type: polypeptideProtein Sequence
Length: 673
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.002 | 0.837 | 0.512 | 1.213 | 1.257 | 0.601 | 1.412 | 0.892 | 1.285 | 1.081 | 1.748 | 1.321 | 1.0 | 1.516 | 1.104 | 0.658 | 0.968 | 0.457 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRK,KRLLSTVFHQMERKGVR,RKKAKQQPQPNRTRSLPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.154
|
0.013
|
0.684
|
0.066
|
0.149
|
0.138
|
0.047
|
0.203
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003364
|
1.000
|
2.000
|
Hsc_gene_15891.t1;Hsc_gene_15891.t2
|
Hsc_gene_15891.t1;Hsc_gene_15891.t2
|
— |
H2KZM9.1 Tubulin polyglutamylase ttll-11 [Caenorhabditis elegans]
|
KAH7710476.1 Protein TTLL-11 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036211
|
GO:0005575_0.765|GO:0110165_0.761|GO:0008150_0.759|GO:0003674_0.703|GO:0005622_0.669|GO:0003824_0.552|GO:0016020_0.545|GO:0043226_0.541|GO:0140096_0.529|GO:0016874_0.503|GO:0016879_0.503|GO:0016881_0.503
|
IPR004344+6-365_62-339+
|
— |
PF03133+62-339+Tubulin-tyrosine_ligase_family
|
— |
PTHR12241+16-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
394-454;592-673
|
2.000
|
1-393;455-591
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
76817.010
|
9.603
|
27.500
|
29.272
|
11.144
|
50.223
|
49.777
|
17.385
|
11.887
|
45.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
343.523
|
548.980
|
684.360
|
339.296
|
75.858
|
31.178
|
40.604
|
323.158
|
462.931
|
389.426
|
420.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.831
|
-0.903
|
-2.194
|
-1.267
|
— |
3.275
|
-2.851
|
— | — | — | — | — |
No JSON data available for plots.