Hg_chrom2_TN10mRNA_3641
Organism: Heterodera glycines Gene Locus: chr2:7755699-7757154 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 1.224 | 0.299 | 0.34 | 0.713 | 1.181 | 1.175 | 0.822 | 1.681 | 1.911 | 0.299 | 1.354 | 2.284 | 0.759 | 0.94 | 1.128 | 0.539 | 0.748 | 1.265 | 0.677 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3462
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.936
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.073
|
0.203
|
0.024
|
0.208
|
0.345
|
0.549
|
0.270
|
0.180
|
0.655
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006980
|
1.000
|
1.000
|
Hsc_gene_15892.t1
|
Hsc_gene_15892.t1
|
— |
O43315.2 Aquaporin-9 [Homo sapiens]
|
KAI1723114.1 major intrinsic protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015267|GO:0016020|GO:0055085
|
GO:0008150_0.912|GO:0005575_0.877|GO:0110165_0.877|GO:0009987_0.837|GO:0016020_0.817|GO:0071944_0.762|GO:0006810_0.753|GO:0051179_0.753|GO:0051234_0.753|GO:0005886_0.714|GO:0055085_0.703|GO:0003674_0.697|GO:0005215_0.561|GO:0022857_0.561|GO:0006833_0.557|GO:0042044_0.557|GO:0015850_0.530|GO:0022803_0.512|GO:0015267_0.511|GO:0015791_0.504
|
IPR000425+16-250_20-39_20-253_57-81_94-113_153-171_185-207_233-253+|IPR023271+16-258_18-257+|IPR050363+7-261+
|
— |
PF00230+16-250+Major_intrinsic_protein
|
— |
PTHR43829+7-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
33365.830
|
8.269
|
4.500
|
14.145
|
13.816
|
35.197
|
64.803
|
8.224
|
5.921
|
46.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
125.460
|
24.062
|
208.186
|
114.848
|
103.189
|
122.395
|
65.421
|
332.100
|
51.005
|
146.810
|
105.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.886
|
2.119
|
-0.751
|
— | — |
-0.894
|
1.337
|
-2.202
|
— | — | — | — | — |
No JSON data available for plots.