Hg_chrom2_TN10mRNA_3644
Organism: Heterodera glycines Gene Locus: chr2:7777512-7779108 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.077 | 0.933 | 0.954 | 0.851 | 1.183 | 0.871 | 0.551 | 1.235 | 1.097 | 1.043 | 1.029 | 1.089 | 1.457 | 0.831 | 1.134 | 0.882 | 1.113 | 1.263 | 1.662 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3465
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.914
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.301
|
0.447
|
0.087
|
0.512
|
0.646
|
0.327
|
0.330
|
0.019
|
0.120
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006983
|
1.000
|
1.000
|
Hsc_gene_15895.t1
|
Hsc_gene_15895.t1
|
— |
G7IYC1.1 Cinnamoyl-CoA reductase CAD2 [Medicago truncatula]
|
KAI1706364.1 3-beta hydroxysteroid dehydrogenase/isomerase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006694|GO:0016616
|
GO:0008150_0.866|GO:0003674_0.730|GO:0003824_0.624|GO:0008152_0.596|GO:0005575_0.592|GO:0110165_0.592|GO:0016491_0.541
|
IPR002225+21-215+|IPR036291+17-296+|IPR050425+18-290+
|
— |
PF01073+21-215+3-beta_hydroxysteroid_dehydrogenase/isomerase_family
|
G3DSA:3.40.50.720:FF:000336+4-308+Aldehyde_reductase
|
PTHR10366+18-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
308-324
|
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
36428.710
|
7.363
|
4.000
|
27.160
|
11.420
|
47.531
|
52.469
|
14.815
|
12.346
|
51.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
189.212
|
225.033
|
21.957
|
200.379
|
369.399
|
445.399
|
267.734
|
141.032
|
51.596
|
162.506
|
114.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.588
|
-0.304
|
3.303
|
0.850
|
0.286
|
-0.726
|
-1.780
|
1.072
|
— | — | — | — | — |
No JSON data available for plots.