Hg_chrom2_TN10mRNA_3645
Organism: Heterodera glycines Gene Locus: chr2:7779172-7782825 Feature type: polypeptideProtein Sequence
Length: 747
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 0.654 | 0.487 | 1.293 | 0.803 | 0.961 | 0.59 | 1.673 | 1.249 | 1.52 | 0.608 | 1.181 | 1.859 | 0.901 | 1.175 | 1.664 | 0.702 | 1.075 | 1.236 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3466
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRLCALSERARRDKP
|
— | — |
10-31
|
1.000
|
— | — |
0.000
|
— | — |
0.078
|
0.053
|
0.008
|
0.152
|
0.366
|
0.498
|
0.363
|
0.007
|
0.817
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006984
|
1.000
|
1.000
|
Hsc_gene_15896.t1
|
Hsc_gene_15896.t1
|
— |
B7Z0W9.2 Proton channel OtopLc [Drosophila melanogaster]
|
KAI1730607.1 otopetrin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015252|GO:0016020|GO:1902600
|
GO:0008150_0.970|GO:0009987_0.936|GO:0003674_0.853|GO:0051179_0.846|GO:0006810_0.832|GO:0051234_0.832|GO:0055085_0.749|GO:0006811_0.729|GO:0034220_0.721|GO:0098660_0.705|GO:0006812_0.704|GO:0098655_0.697|GO:0098662_0.696|GO:0005215_0.694|GO:0022857_0.694|GO:0015267_0.692|GO:0022803_0.692|GO:0005216_0.691|GO:0015075_0.691|GO:0015318_0.674|GO:0005261_0.673|GO:0008324_0.673|GO:1902600_0.670|GO:0022890_0.667|GO:0015078_0.650|GO:0015252_0.650
|
IPR004878+77-673_220-655+
|
— |
PF03189+220-655+Otopetrin
|
— |
PTHR21522+77-673+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-747
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
83602.040
|
8.599
|
29.500
|
20.616
|
13.788
|
43.106
|
56.894
|
13.119
|
7.497
|
48.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
87.135
|
81.491
|
19.012
|
19.011
|
27.546
|
38.221
|
181.574
|
22.306
|
63.331
|
187.781
|
134.446
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.328
|
-2.238
|
— | — | — |
2.258
|
-0.885
|
3.167
|
— | — | — | — | — |
No JSON data available for plots.