Hg_chrom2_TN10mRNA_3648
Organism: Heterodera glycines Gene Locus: chr2:7796561-7798246 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.179 | 0.676 | 0.932 | 1.52 | 1.126 | 0.603 | 1.858 | 1.426 | 1.278 | 1.177 | 0.795 | 1.314 | 0.65 | 1.172 | 1.11 | 0.886 | 0.973 | 1.299 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3469
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.440
|
0.151
|
0.040
|
0.514
|
0.207
|
0.519
|
0.215
|
0.010
|
0.445
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006986
|
1.000
|
1.000
|
Hsc_gene_15900.t1
|
Hsc_gene_15900.t1
|
— |
Q9DC53.3 Copine-8 [Mus musculus]
|
KAI1733143.1 copine domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.891|GO:0110165_0.883|GO:0016020_0.758|GO:0008150_0.688|GO:0043226_0.594|GO:0009987_0.587|GO:0043227_0.564|GO:0005622_0.516
|
IPR000008+1-124_17-123_22-115_149-265_195-260+|IPR035892+21-154_22-141_165-290_179-272+|IPR045052+11-292+
|
SM00239+17-123_149-265+
|
PF00168+22-115_195-260+C2_domain
|
— |
PTHR10857+11-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
33897.770
|
7.911
|
7.500
|
30.068
|
11.486
|
52.703
|
47.297
|
17.230
|
12.838
|
44.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
952.514
|
143.703
|
911.697
|
716.466
|
1197.199
|
2467.703
|
1224.341
|
2499.101
|
65.831
|
682.795
|
418.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.435
|
2.180
|
-0.239
|
0.709
|
1.058
|
-1.002
|
— |
-0.888
|
-3.491
|
3.647
|
— | — | — |
No JSON data available for plots.