Hg_chrom2_TN10mRNA_3649
Organism: Heterodera glycines Gene Locus: chr2:7798332-7799980 Feature type: polypeptideProtein Sequence
Length: 329
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.449 | 0.778 | 0.995 | 0.314 | 0.912 | 1.637 | 0.434 | 1.064 | 0.743 | 1.191 | 1.243 | 2.324 | 0.844 | 1.461 | 1.055 | 0.564 | 0.747 | 0.921 | 1.637 | 0.983 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3470
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland17|KJ825728.1#tn8canujg19783.t1
|
Gland17|KJ8257281#tn8canujg19783t1
|
Hsc_gene_15901
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus|chloroplast
|
KKQAQPWMDEYEVRSVRR
|
— | — |
50-87
|
0.741
|
1-26
|
0.939
|
1.000
|
0.000
|
0.000
|
0.417
|
0.189
|
0.012
|
0.526
|
0.127
|
0.152
|
0.133
|
0.002
|
0.130
|
0.413
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006987
|
1.000
|
1.000
|
Hsc_gene_15901.t1
|
Hsc_gene_15901.t1
|
— | — |
AJR19785.1 esophageal gland-localized secretory protein 17 [Heterodera glycines]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
67-138
|
2.000
|
1-66;139-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
37204.960
|
9.596
|
11.500
|
26.444
|
10.638
|
44.681
|
55.319
|
15.502
|
10.942
|
48.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
2614.692
|
20.621
|
65.658
|
2164.754
|
1481.130
|
268.259
|
346.396
|
116.554
|
1634.058
|
8539.968
|
5580.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.442
|
6.579
|
5.153
|
-0.579
|
-2.450
|
0.381
|
-1.315
|
1.718
|
— | — | — | — | — |