SCN Proteipedia

Hg_chrom2_TN10mRNA_3651

Organism: Heterodera glycines Gene Locus: chr2:7805133-7808036 Feature type: polypeptide

Protein Sequence

Length: 341

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.398	1.091	0.533	0.303	0.88	0.827	1.187	0.44	0.978	1.664	0.4	2.415	1.955	0.959	0.539	1.257	0.481	1.111	1.128	0.431	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3472	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.614

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.075	0.175	0.084	0.162	0.453	0.718	0.525	0.025	0.567	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006988	1.000	1.000	Hsc_gene_15903.t1	Hsc_gene_15903.t1;Hsc_gene_15903.t2	—	Q6P6S2.1 Zinc transporter ZIP11 [Rattus norvegicus]	KAH7728665.1 Protein F59A3.4 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020\|GO:0030001\|GO:0046873\|GO:0055085	GO:0008150_0.947\|GO:0005575_0.906\|GO:0110165_0.906\|GO:0009987_0.887\|GO:0016020_0.880\|GO:0071944_0.862\|GO:0051179_0.846\|GO:0005886_0.845\|GO:0006810_0.843\|GO:0051234_0.843\|GO:0003674_0.842\|GO:0055085_0.801\|GO:0005622_0.773\|GO:0005737_0.759\|GO:0043226_0.754\|GO:0005215_0.748\|GO:0022857_0.748\|GO:0043227_0.740\|GO:0006811_0.733\|GO:0034220_0.731\|GO:0043229_0.726\|GO:0098660_0.725\|GO:0006812_0.713\|GO:0098655_0.713\|GO:0098662_0.712\|GO:0030001_0.710\|GO:0043231_0.710\|GO:0015318_0.692\|GO:0015075_0.691\|GO:0008324_0.688\|GO:0098657_0.686\|GO:0005773_0.685\|GO:0000041_0.682\|GO:0022890_0.679\|GO:0098739_0.676\|GO:0046873_0.674\|GO:0098659_0.674\|GO:0099587_0.674\|GO:0006825_0.670\|GO:0006829_0.670\|GO:0035434_0.670\|GO:0071577_0.670\|GO:0071578_0.670\|GO:0046915_0.658\|GO:0012505_0.657\|GO:0005375_0.650\|GO:0005385_0.650\|GO:0005794_0.570\|GO:0005634_0.560	IPR003689+12-337+	—	PF02535+12-337+ZIP_Zinc_transporter	—	PTHR11040+12-337+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	123-180	2.000	1-122;181-341	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.715	36180.830	4.517	-8.500	14.370	10.850	34.018	65.982	6.158	8.211	54.545

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	tan	810.265	879.631	905.771	1065.032	1020.064	1269.214	878.331	1275.050	669.071	308.196	462.857

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.187	0.139	0.342	—	0.330	-0.522	—	-0.397	—	—	—	—	—

No JSON data available for plots.

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