Hg_chrom2_TN10mRNA_3653
Organism: Heterodera glycines Gene Locus: chr2:7810192-7812873 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 0.712 | 0.788 | 0.792 | 1.361 | 1.439 | 0.759 | 0.638 | 1.134 | 1.034 | 0.85 | 3.301 | 0.496 | 0.932 | 1.978 | 0.948 | 1.046 | 0.85 | 0.392 | 0.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3474
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKMMRSNWEDRRGKG,RRNTHSAGDKLMRRRDPR
|
12-35
|
0.985
|
6-33
|
0.979
|
— | — |
0.000
|
— | — |
0.152
|
0.079
|
0.059
|
0.127
|
0.343
|
0.676
|
0.493
|
0.005
|
0.741
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006990
|
1.000
|
1.000
|
Hsc_gene_15905.t1
|
Hsc_gene_15905.t1;Hsc_gene_15905.t2
|
— | — |
NP_001368152.1 Transmembrane protein 200C [Caenorhabditis elegans];CCM09427.1 Transmembrane protein 200C [Caenorhabditis elegans]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018787+53-170_53-275+
|
— |
PF10177+53-170+Uncharacterised_conserved_protein_(DUF2371)
|
— |
PTHR31815+53-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-392
|
1.000
|
1-170
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
44036.710
|
9.426
|
13.500
|
29.082
|
5.102
|
50.765
|
49.235
|
16.582
|
12.500
|
47.449
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
441.532
|
888.411
|
1269.533
|
442.189
|
215.542
|
515.383
|
141.123
|
899.050
|
295.306
|
71.011
|
167.137
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.285
|
-1.144
|
-1.412
|
-1.069
|
1.272
|
-1.860
|
0.698
|
-2.530
|
— | — | — | — | — |
No JSON data available for plots.