Hg_chrom2_TN10mRNA_3657
Organism: Heterodera glycines Gene Locus: chr2:7819164-7820250 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 0.727 | 0.663 | 0.718 | 0.781 | 0.668 | 0.558 | 2.083 | 1.042 | 1.76 | 1.184 | 0.613 | 2.315 | 1.002 | 1.807 | 0.967 | 0.598 | 0.631 | 2.404 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3478
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRKAKR
|
13-60
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.370
|
0.546
|
0.165
|
0.418
|
0.219
|
0.112
|
0.209
|
0.051
|
0.090
|
0.642
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
A3DJX6.1 Probable RNA 2'-phosphotransferase [Acetivibrio thermocellus ATCC 27405]
|
HFQ92553.1 RNA 2'-phosphotransferase [Anaerolineae bacterium]
|
NKQ36046
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016740
|
GO:0003674_0.828|GO:0003824_0.703|GO:0016740_0.681|GO:0016772_0.657
|
IPR002745+109-172+|IPR042081+105-192+
|
— |
PF01885+109-172+RNA_2'-phosphotransferase,_Tpt1_/_KptA_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
6e3a_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
22419.250
|
10.951
|
20.000
|
29.167
|
16.667
|
45.312
|
54.688
|
20.833
|
8.333
|
40.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
476.738
|
641.030
|
437.053
|
292.104
|
216.635
|
222.223
|
199.131
|
364.519
|
109.952
|
1113.503
|
683.409
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.784
|
-1.271
|
-0.471
|
-0.464
|
— | — |
0.608
|
-0.730
|
-3.474
|
— | — | — | — |
No JSON data available for plots.