Hg_chrom2_TN10mRNA_3658
Organism: Heterodera glycines Gene Locus: chr2:7821435-7823756 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 1.51 | 0.472 | 1.455 | 0.703 | 1.249 | 0.773 | 0.812 | 1.227 | 1.316 | 0.935 | 2.483 | 1.263 | 1.374 | 1.06 | 1.02 | 0.905 | 0.885 | 1.249 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3479
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
7-33
|
0.986
|
32-77
|
0.900
|
— | — |
0.000
|
— | — |
0.083
|
0.113
|
0.037
|
0.204
|
0.327
|
0.448
|
0.578
|
0.009
|
0.235
|
0.685
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006993
|
1.000
|
1.000
|
Hsc_gene_15909.t1
|
Hsc_gene_15909.t1
|
— |
Q95Q39.2 Protein male abnormal 7 [Caenorhabditis elegans]
|
KAI1725402.1 protein male abnormal 7 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.727|GO:0008150_0.723|GO:0110165_0.721|GO:0009987_0.551|GO:0003674_0.525
|
IPR000742+55-89_58-89_59-87_77-88+|IPR012674+139-304_141-300+|IPR014878+146-283+|IPR045165+48-303+
|
SM00181+58-89+
|
PF00008+59-87+EGF-like_domain|PF08768+146-283+THAP4-like,_heme-binding_beta-barrel_domain
|
— |
PTHR15854+48-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
34631.450
|
9.337
|
16.500
|
19.805
|
10.065
|
43.831
|
56.169
|
12.987
|
6.818
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
452.848
|
147.832
|
39.554
|
86.832
|
478.406
|
2025.419
|
256.909
|
507.133
|
91.848
|
584.043
|
373.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.133
|
-0.904
|
1.245
|
2.430
|
2.098
|
-2.969
|
-2.113
|
-0.834
|
— | — | — | — | — |
No JSON data available for plots.