Hg_chrom2_TN10mRNA_3660
Organism: Heterodera glycines Gene Locus: chr2:7826111-7826889 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.943 | 1.31 | 0.932 | 0.976 | 1.04 | 0.804 | 1.351 | 1.401 | 0.974 | 0.683 | 2.65 | 1.251 | 0.78 | 1.379 | 0.837 | 0.96 | 1.16 | 0.347 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.511
|
0.091
|
0.595
|
0.158
|
0.400
|
0.210
|
0.374
|
0.184
|
0.282
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006995
|
1.000
|
1.000
|
Hsc_gene_15911.t1
|
Hsc_gene_15911.t1
|
— |
P45743.1 Isochorismatase [Bacillus subtilis subsp. subtilis str. 168]
|
ALI53582.1 isochorismatase [Hirschmanniella oryzae]
|
WP_035026947
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.727|GO:0003674_0.656|GO:0005575_0.626|GO:0110165_0.615|GO:0005622_0.547|GO:0003824_0.534|GO:0005737_0.505
|
IPR000868+25-196+|IPR036380+9-209_15-219+|IPR050272+22-210+
|
— |
PF00857+25-196+Isochorismatase_family
|
— |
PTHR43540+22-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-222
|
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
24800.400
|
6.228
|
-1.000
|
27.027
|
9.459
|
46.847
|
53.153
|
13.964
|
13.063
|
51.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
523.308
|
786.205
|
620.427
|
387.987
|
646.567
|
1170.149
|
1032.317
|
748.379
|
115.123
|
181.121
|
152.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.572
|
-1.156
|
-0.568
|
0.704
|
0.872
|
— |
-0.753
|
0.609
|
— | — | — | — | — |
No JSON data available for plots.