SCN Proteipedia

Hg_chrom2_TN10mRNA_3662

Organism: Heterodera glycines Gene Locus: chr2:7829009-7832838 Feature type: polypeptide

Protein Sequence

Length: 516

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.127	1.622	0.388	0.869	1.195	1.044	0.946	1.453	0.689	0.786	0.734	0.912	1.238	1.155	1.701	1.218	1.43	0.499	0.596	0.342	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3482	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRCFLIDSLLEERQKRL	—	—	—	—	—	—	0.000	—	—	0.783	0.101	0.007	0.264	0.022	0.028	0.040	0.127	0.065	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001848	2.000	2.000	Hsc_gene_15912.t1;Hsc_gene_15912.t2	Hsc_gene_15912.t2	—	Q17895.2 Zinc finger protein mnm-2 [Caenorhabditis elegans]	KAI1700669.1 zinc finger, c2H2 type domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.869\|GO:0110165_0.866\|GO:0016020_0.839\|GO:0043226_0.823\|GO:0005622_0.821\|GO:0043229_0.821\|GO:0043227_0.772\|GO:0043231_0.766\|GO:0005634_0.745\|GO:0008150_0.691\|GO:0065007_0.658\|GO:0050789_0.651\|GO:0009987_0.642\|GO:0050794_0.638\|GO:0032502_0.587\|GO:0048856_0.587\|GO:0032501_0.571\|GO:0007275_0.545\|GO:0030154_0.526\|GO:0048731_0.526\|GO:0048869_0.526\|GO:0048518_0.525\|GO:0003674_0.518\|GO:0048522_0.515\|GO:0007399_0.505	IPR013087+377-399_377-404_379-399_405-427_405-432_407-427_433-455_433-460_435-455+\|IPR036236+374-433_422-456+	SM00355+377-399_405-427_433-455+	PF00096+377-399_405-427_433-455+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000770+430-457+zinc_finger_protein_16\|G3DSA:3.30.160.60:FF:001182+374-399+Zinc_finger,_C2H2_type\|G3DSA:3.30.160.60:FF:001732+400-426+Zgc:162936	PTHR24393+237-491+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-188;257-382	2.000	189-256;383-516	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.944	56512.030	10.017	27.500	25.388	9.302	53.682	46.318	16.085	9.302	55.814

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	157.567	215.156	391.247	130.601	37.902	19.384	43.068	154.630	231.706	143.581	181.349

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.633	-0.858	-1.474	-1.817	-0.952	1.161	2.895	-1.704	—	—	—	—	—

No JSON data available for plots.

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