Hg_chrom2_TN10mRNA_3664
Organism: Heterodera glycines Gene Locus: chr2:7833094-7837308 Feature type: polypeptideProtein Sequence
Length: 721
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.5 | 0.935 | 0.857 | 0.67 | 1.664 | 0.747 | 0.76 | 1.526 | 1.541 | 0.993 | 0.841 | 1.713 | 1.425 | 0.587 | 1.613 | 1.09 | 0.864 | 1.156 | 0.533 | 0.775 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3483
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
REKRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.164
|
0.190
|
0.032
|
0.465
|
0.209
|
0.265
|
0.289
|
0.063
|
0.709
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001849
|
2.000
|
2.000
|
Hsc_gene_15913.t1;Hsc_gene_15913.t2
|
Hsc_gene_15913.t1
|
— |
O02298.3 Soluble guanylate cyclase gcy-35 [Caenorhabditis elegans]
|
KAF8387309.1 gcy-35 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004383|GO:0006182|GO:0009190|GO:0020037|GO:0035556
|
GO:0008150_0.850|GO:0005575_0.846|GO:0110165_0.843|GO:0003674_0.709|GO:0005622_0.694|GO:0009987_0.652|GO:0050896_0.613|GO:0016020_0.515
|
IPR001054+398-591_426-609_432-608_434-562+|IPR011644+3-166+|IPR011645+221-419+|IPR024096+1-189+|IPR029787+420-608_421-612+|IPR038158+1-194+|IPR042463+222-356+
|
SM00044+398-591+
|
PF00211+426-609+Adenylate_and_Guanylate_cyclase_catalytic_domain|PF07700+3-166+Haem-NO-binding|PF07701+221-419+Heme_NO_binding_associated
|
G3DSA:3.30.450.260:FF:000002+221-356+guanylate_cyclase_soluble_subunit_alpha-2|G3DSA:3.30.70.1230:FF:000007+421-613+Guanylate_cyclase_soluble_subunit_alpha-3|G3DSA:3.90.1520.10:FF:000005+1-195+Soluble_guanylate_cyclase_gcy-36
|
PTHR45655+3-622+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
623-721
|
1.000
|
1-622
|
8fx4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
82653.190
|
6.654
|
2.000
|
31.207
|
11.512
|
51.040
|
48.960
|
16.505
|
14.702
|
44.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
198.839
|
124.194
|
342.617
|
139.083
|
32.735
|
17.593
|
30.557
|
101.402
|
120.832
|
483.729
|
328.202
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.233
|
— |
-1.190
|
-2.115
|
-0.883
|
0.808
|
2.426
|
-1.588
|
— | — | — | — | — |
No JSON data available for plots.