SCN Proteipedia

Hg_chrom2_TN10mRNA_3665

Organism: Heterodera glycines Gene Locus: chr2:7837521-7845067 Feature type: polypeptide

Protein Sequence

Length: 1,513

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.145	0.922	0.973	0.547	1.377	1.119	0.795	1.586	1.19	1.313	0.861	1.361	1.23	0.547	1.241	0.859	0.683	0.911	1.068	0.816	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3484	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.720

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RKAWQLIEHCEQRLKPR	—	—	65-86	0.967	—	—	0.000	—	—	0.417	0.117	0.017	0.470	0.131	0.372	0.205	0.023	0.221	0.085

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006996	1.000	1.000	Hsc_gene_15914.t1	Hsc_gene_15914.t1	—	E9PY46.1 Intraflagellar transport protein 140 homolog [Mus musculus]	KAI1727582.1 intraflagellar transport protein like protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.954\|GO:0009987_0.898\|GO:0005575_0.891\|GO:0110165_0.882\|GO:0005622_0.808\|GO:0016020_0.798\|GO:0051179_0.757\|GO:0065007_0.755\|GO:0043226_0.752\|GO:0071840_0.744\|GO:0006810_0.743\|GO:0016043_0.743\|GO:0051234_0.743\|GO:0071944_0.737\|GO:0050789_0.736\|GO:0043229_0.729\|GO:0005886_0.723\|GO:0050794_0.715\|GO:0051641_0.702\|GO:0043227_0.699\|GO:0006996_0.697\|GO:0044085_0.696\|GO:0030030_0.691\|GO:0120036_0.691\|GO:0033036_0.690\|GO:0051649_0.689\|GO:0022607_0.687\|GO:0070727_0.687\|GO:0008104_0.686\|GO:0046907_0.683\|GO:0007010_0.682\|GO:0016192_0.681\|GO:0007017_0.678\|GO:0007018_0.677\|GO:0070925_0.677\|GO:0030031_0.676\|GO:0033365_0.676\|GO:0051640_0.676\|GO:0120031_0.676\|GO:0000226_0.675\|GO:0030705_0.675\|GO:0048193_0.675\|GO:0051656_0.675\|GO:0010970_0.674\|GO:0031503_0.674\|GO:0051648_0.674\|GO:0051650_0.674\|GO:0099111_0.674\|GO:0001578_0.670\|GO:0005929_0.670\|GO:0006903_0.670\|GO:0030990_0.670\|GO:0032991_0.670\|GO:0035082_0.670\|GO:0035735_0.670\|GO:0042073_0.670\|GO:0042995_0.670\|GO:0044782_0.670\|GO:0048199_0.670\|GO:0060271_0.670\|GO:0061512_0.670\|GO:0097712_0.670\|GO:0098590_0.670\|GO:0120025_0.670\|GO:1905349_0.670\|GO:0035721_0.628\|GO:0043228_0.610\|GO:0043232_0.607\|GO:0005856_0.570\|GO:0015630_0.552\|GO:0005815_0.545\|GO:0036064_0.540\|GO:0005814_0.506\|GO:0030991_0.506	IPR011990+903-1098+\|IPR015943+4-139_220-655+\|IPR036322+9-430+	—	—	G3DSA:1.25.40.470:FF:000028+977-1157+Intraflagellar_transport_protein_140-like_protein	PTHR15722+49-1481+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1477-1513	1.000	1-1476	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.530	170093.400	6.378	-4.000	28.553	11.765	47.059	52.941	14.937	13.615	46.464

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	842.534	664.102	781.466	308.683	80.697	42.849	94.019	173.548	460.900	2535.898	1646.613

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.242	-1.231	-1.965	-0.899	1.142	1.913	-0.742	—	—	-4.435	—	—

No JSON data available for plots.

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