Hg_chrom2_TN10mRNA_3667
Organism: Heterodera glycines Gene Locus: chr2:7850839-7853006 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.115 | 0.753 | 0.601 | 1.67 | 1.173 | 0.441 | 1.525 | 1.549 | 1.354 | 1.32 | 1.025 | 1.695 | 0.628 | 0.934 | 0.934 | 0.607 | 0.825 | 1.508 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3486
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
26-46
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.604
|
0.148
|
0.002
|
0.654
|
0.072
|
0.043
|
0.071
|
0.002
|
0.190
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006998
|
1.000
|
1.000
|
Hsc_gene_15918.t1
|
Hsc_gene_15918.t1
|
— |
Q9LU89.1 Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform [Arabidopsis thaliana]
|
KAI8881255.1 protein phosphatase 2A regulatory B subunit [Backusella circina FSU 941]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000159|GO:0007165|GO:0019888
|
GO:0005575_0.889|GO:0110165_0.861|GO:0005622_0.830|GO:0005737_0.738|GO:0008150_0.666|GO:0009987_0.584|GO:0043226_0.577|GO:0043229_0.568|GO:0003674_0.554|GO:0016020_0.541
|
IPR002554+6-456_159-456+|IPR011989+22-459+|IPR016024+161-455+
|
— |
PF01603+159-456+Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)
|
— |
PTHR10257+6-456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15;455-459
|
1.000
|
16-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
53149.050
|
6.857
|
3.000
|
30.501
|
13.072
|
50.109
|
49.891
|
16.340
|
14.161
|
40.305
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
63.623
|
134.273
|
198.563
|
46.453
|
8.532
|
40.288
|
12.781
|
148.338
|
76.517
|
0.000
|
32.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.338
|
-1.668
|
-1.988
|
-2.473
|
2.253
|
-1.648
|
1.776
|
-3.395
|
5.313
|
— | — | — | — |
No JSON data available for plots.