Hg_chrom2_TN10mRNA_3668
Organism: Heterodera glycines Gene Locus: chr2:7862481-7865730 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 0.948 | 0.847 | 0.603 | 1.489 | 1.195 | 0.555 | 1.65 | 1.467 | 1.443 | 0.912 | 1.828 | 2.373 | 0.747 | 1.03 | 0.777 | 0.732 | 0.677 | 1.195 | 1.028 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.714
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.190
|
0.082
|
0.003
|
0.222
|
0.527
|
0.334
|
0.828
|
0.008
|
0.136
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006999
|
1.000
|
1.000
|
Hsc_gene_15920.t1
|
Hsc_gene_15920.t1
|
— |
A6QNR0.2 Hexosaminidase D [Bos taurus]
|
KAI1722234.1 glycosyl hydrolase family 20, catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015929
|
GO:0005575_0.903|GO:0110165_0.902|GO:0003674_0.863|GO:0016020_0.851|GO:0043226_0.772|GO:0003824_0.749|GO:0043227_0.746|GO:0016787_0.691|GO:0004553_0.654|GO:0016798_0.654|GO:0004563_0.650|GO:0015929_0.650|GO:0005622_0.547|GO:0005737_0.516
|
IPR017853+52-369+|IPR038901+43-496+
|
— | — | — |
PTHR21040+43-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
515-515
|
1.000
|
1-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
60618.730
|
6.067
|
-4.500
|
27.961
|
16.893
|
46.602
|
53.398
|
14.369
|
13.592
|
38.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
930.646
|
859.323
|
578.249
|
682.761
|
735.895
|
780.608
|
586.923
|
846.529
|
715.110
|
1633.886
|
1240.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.801
|
-0.469
|
0.348
|
— | — |
-0.402
|
— |
-0.388
|
— | — | — | — | — |
No JSON data available for plots.