Hg_chrom2_TN10mRNA_3669
Organism: Heterodera glycines Gene Locus: chr2:7866575-7867789 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 0.78 | 0.244 | 1.041 | 0.336 | 3.012 | 2.397 | 0.336 | 0.746 | 0.408 | 0.203 | 0.79 | 0.373 | 4.517 | 0.685 | 0.767 | 0.66 | 0.61 | 0.258 | 0.197 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3488
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.075
|
— | — |
0.045
|
0.083
|
0.010
|
0.102
|
0.389
|
0.190
|
0.246
|
0.004
|
0.692
|
0.349
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007000
|
1.000
|
1.000
|
Hsc_gene_15921.t1
|
Hsc_gene_15921.t1
|
— |
A8XV36.1 Cuticle collagen 144 [Caenorhabditis briggsae]
|
KAI1701773.1 cuticle collagen 10 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.946|GO:0032501_0.908|GO:0032502_0.893|GO:0048856_0.893|GO:0007275_0.873|GO:0040002_0.670|GO:0042335_0.670|GO:0005575_0.656|GO:0110165_0.656|GO:0071944_0.537|GO:0003674_0.519
|
IPR002486+6-58_10-58+|IPR050632+14-287+
|
SM01088+6-58+
|
PF01484+10-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+14-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-298
|
1.000
|
1-38
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
29228.650
|
8.232
|
5.000
|
8.725
|
3.020
|
33.221
|
66.779
|
5.369
|
3.356
|
70.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5323.857
|
901.052
|
12.078
|
22.377
|
11304.566
|
38394.689
|
47.538
|
4166.353
|
62.113
|
2677.046
|
1556.360
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.455
|
-5.468
|
1.002
|
8.950
|
1.780
|
-9.650
|
-3.322
|
-6.307
|
-5.579
|
— |
2.281
|
— | — |
No JSON data available for plots.