Hg_chrom2_TN10mRNA_3672
Organism: Heterodera glycines Gene Locus: chr2:7878396-7881019 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 0.928 | 0.811 | 1.133 | 0.548 | 1.023 | 0.587 | 0.587 | 1.356 | 1.808 | 0.249 | 1.795 | 1.761 | 1.038 | 1.533 | 1.308 | 0.77 | 0.96 | 0.722 | 0.552 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3491
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
43-72
|
0.843
|
— | — | — | — |
0.000
|
— | — |
0.060
|
0.130
|
0.059
|
0.099
|
0.315
|
0.575
|
0.503
|
0.172
|
0.573
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007002
|
1.000
|
1.000
|
Hsc_gene_15924.t1
|
Hsc_gene_15924.t1
|
— |
A8XI14.1 Sugar transporter SWEET1 [Caenorhabditis briggsae]
|
KAI1732766.1 sugar efflux transporter for intercellular exchange domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051119
|
GO:0008150_0.866|GO:0005575_0.771|GO:0110165_0.771|GO:0016020_0.756|GO:0009987_0.720|GO:0051179_0.673|GO:0071944_0.668|GO:0005886_0.665|GO:0003674_0.647|GO:0006810_0.633|GO:0051234_0.633|GO:0055085_0.569|GO:0005622_0.537|GO:0005215_0.510|GO:0022857_0.510|GO:0043226_0.508
|
IPR004316+22-105_136-220+|IPR047664+28-219+
|
— |
PF03083+22-105_136-220+Sugar_efflux_transporter_for_intercellular_exchange
|
G3DSA:1.20.1280.290:FF:000004+133-223+Sugar_transporter_SWEET|G3DSA:1.20.1280.290:FF:000010+20-109+Sugar_transporter_SWEET
|
PTHR10791+28-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
305-353;407-426
|
2.000
|
1-304;354-406
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
47362.280
|
8.258
|
8.500
|
18.075
|
10.329
|
39.906
|
60.094
|
10.329
|
7.746
|
50.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
1858.965
|
4275.501
|
2025.518
|
1025.585
|
809.002
|
2212.361
|
958.552
|
4204.944
|
818.014
|
1702.664
|
1323.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.307
|
-2.197
|
-0.874
|
-0.375
|
1.467
|
-1.198
|
0.821
|
-1.992
|
— | — | — | — | — |
No JSON data available for plots.