SCN Proteipedia

Hg_chrom2_TN10mRNA_3673

Organism: Heterodera glycines Gene Locus: chr2:7882224-7887010 Feature type: polypeptide

Protein Sequence

Length: 804

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.781	0.752	0.611	0.858	0.891	0.925	0.874	0.933	1.354	1.16	0.735	1.829	2.073	1.029	0.863	1.066	1.081	0.961	1.435	1.207	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3492	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	FKRR,PAIKRNR	—	—	43-104	0.985	—	—	0.000	—	—	0.074	0.156	0.011	0.148	0.176	0.481	0.261	0.014	0.865	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001850	2.000	2.000	Hsc_gene_15925.t1;Hsc_gene_15925.t2	Hsc_gene_15925.t1;Hsc_gene_15925.t2	—	Q03614.3 Sodium-dependent dopamine transporter [Caenorhabditis elegans]	KAI1713826.1 sodium:neurotransmitter symporter family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.972\|GO:0009987_0.943\|GO:0006810_0.925\|GO:0051179_0.925\|GO:0051234_0.925\|GO:0055085_0.897\|GO:0005575_0.883\|GO:0110165_0.883\|GO:0003674_0.877\|GO:0005215_0.869\|GO:0022857_0.869\|GO:0006811_0.819\|GO:0034220_0.811\|GO:0015075_0.798\|GO:0098660_0.789\|GO:0006812_0.771\|GO:0098655_0.768\|GO:0030001_0.767\|GO:0006814_0.764\|GO:0015318_0.763\|GO:0098662_0.759\|GO:0008324_0.757\|GO:0016020_0.756\|GO:0071705_0.739\|GO:0071944_0.737\|GO:0035725_0.729\|GO:0005886_0.727\|GO:0022890_0.726\|GO:0046873_0.726\|GO:0015081_0.707\|GO:0015291_0.677\|GO:0022804_0.677\|GO:0015293_0.668\|GO:0022853_0.663\|GO:0015294_0.661\|GO:0015370_0.648\|GO:0030054_0.571\|GO:0006820_0.552\|GO:0015698_0.551\|GO:0098661_0.547\|GO:0006821_0.545\|GO:0098656_0.537\|GO:0045202_0.536\|GO:0015103_0.532\|GO:1902476_0.531\|GO:0008509_0.528\|GO:0015108_0.515	IPR000175+188-762_198-747_199-742_207-228_223-237_236-255_280-306_306-326_427-444_509-529_563-582_643-663_683-703+\|IPR037272+199-742+	—	PF00209+199-742+Sodium:neurotransmitter_symporter_family	—	PTHR11616+188-762+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-108	1.000	109-804	8y2d_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	90449.510	7.747	10.500	19.652	15.299	40.547	59.453	10.945	8.706	48.881

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	413.013	103.225	999.646	267.956	53.236	53.709	53.176	279.649	588.858	686.315	644.548

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.047	1.240	-1.790	-2.361	—	—	2.279	-2.253	—	—	—	—	—

No JSON data available for plots.

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