Hg_chrom2_TN10mRNA_3676
Organism: Heterodera glycines Gene Locus: chr2:7888543-7891554 Feature type: polypeptideProtein Sequence
Length: 553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.862 | 0.757 | 0.658 | 0.935 | 1.356 | 0.974 | 0.71 | 1.718 | 1.005 | 1.662 | 1.014 | 0.745 | 1.859 | 0.869 | 1.808 | 1.059 | 0.623 | 0.521 | 0.835 | 0.319 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KERGKPT,RRFCRCARTLSSRRFRP,RRLFTRRKFKSQQRTKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.498
|
0.358
|
0.035
|
0.601
|
0.103
|
0.060
|
0.081
|
0.064
|
0.077
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007004
|
1.000
|
1.000
|
Hsc_gene_15927.t1
|
Hsc_gene_15927.t1
|
— |
O14772.3 Fucose-1-phosphate guanylyltransferase [Homo sapiens]
|
KAI1729027.1 l-fucokinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016772
|
GO:0008150_0.944|GO:0003674_0.856|GO:0008152_0.801|GO:0044238_0.797|GO:0003824_0.704|GO:0044281_0.687|GO:0016740_0.685|GO:0005975_0.674|GO:0005996_0.670|GO:0006004_0.670|GO:0019318_0.670|GO:0005575_0.662|GO:0110165_0.662|GO:0016772_0.659|GO:0016779_0.655|GO:0047341_0.650|GO:0070568_0.650|GO:0005622_0.612|GO:0009987_0.588|GO:0005737_0.501
|
IPR012887+199-462+
|
— |
PF07959+199-462+L-fucokinase
|
— |
PTHR15045+12-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
532-553
|
1.000
|
1-531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
63208.830
|
9.822
|
30.500
|
30.741
|
12.297
|
49.005
|
50.995
|
18.987
|
11.754
|
42.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1531.900
|
2139.372
|
2207.902
|
1457.242
|
1001.287
|
1133.156
|
920.413
|
1836.109
|
2265.460
|
992.160
|
1537.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.184
|
-0.691
|
-0.491
|
-0.573
|
— |
-0.289
|
0.592
|
-0.854
|
— | — | — | — | — |
No JSON data available for plots.