Hg_chrom2_TN10mRNA_3677
Organism: Heterodera glycines Gene Locus: chr2:7891984-7895723 Feature type: polypeptideProtein Sequence
Length: 886
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.919 | 0.78 | 0.195 | 1.242 | 1.071 | 0.658 | 0.847 | 1.505 | 1.251 | 1.436 | 1.527 | 1.505 | 1.215 | 1.129 | 1.338 | 0.666 | 0.804 | 0.608 | 0.531 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
— |
KRRK,RKRKEKGKA,KKRGEFRREMRTGKR,KKLHNFLQRKRKEKGK,RKSAPAKAQHHARSKRA,RKVKQLAHSYDANRRERRQ
|
— | — | — | — |
1-28
|
0.769
|
0.982
|
4.000
|
4.000
|
0.314
|
0.169
|
0.077
|
0.047
|
0.106
|
0.042
|
0.137
|
0.097
|
0.312
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007005
|
1.000
|
1.000
|
Hsc_gene_15928.t1
|
Hsc_gene_15928.t1
|
— | — |
KAI1707294.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.953|GO:0110165_0.953|GO:0008150_0.952|GO:0032501_0.799|GO:0032502_0.785|GO:0048856_0.785|GO:0007275_0.747|GO:0009888_0.690|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.557|GO:0005615_0.554
|
IPR006954+342-685+
|
— |
PF04870+342-685+Moulting_cycle
|
— |
PTHR21523+177-882+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-174;316-399
|
2.000
|
175-315;400-886
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
100019.470
|
10.126
|
36.500
|
28.442
|
9.707
|
50.000
|
50.000
|
16.704
|
11.738
|
45.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
445.280
|
52.001
|
78.273
|
44.394
|
33.466
|
128.094
|
41.504
|
926.705
|
93.777
|
1388.604
|
833.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.358
|
-0.365
|
-0.708
|
-0.439
|
1.950
|
-1.613
|
2.757
|
-4.337
|
-4.014
|
— |
-5.095
|
— | — |