Hg_chrom2_TN10mRNA_3678
Organism: Heterodera glycines Gene Locus: chr2:7897844-7900253 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.409 | 0.708 | 0.746 | 1.046 | 1.388 | 0.618 | 1.84 | 1.154 | 1.141 | 0.656 | 1.146 | 1.984 | 0.957 | 1.104 | 0.989 | 0.674 | 1.181 | 1.166 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3496
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.306
|
0.051
|
0.739
|
0.172
|
0.165
|
0.090
|
0.038
|
0.146
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003368
|
2.000
|
1.000
|
Hsc_gene_6524.t1
|
— | — |
Q94BV5.1 Flavin-containing monooxygenase FMO GS-OX-like 4 [Arabidopsis thaliana]
|
KAI1698011.1 flavin-binding monooxygenase-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.869|GO:0009987_0.748|GO:0003674_0.677|GO:0008152_0.621|GO:0044237_0.574|GO:0003824_0.550
|
IPR020946+7-244_268-392+|IPR036188+4-245_5-201_202-274_277-455_284-462+|IPR050346+269-446+
|
— |
PF00743+7-244_268-392+Flavin-binding_monooxygenase-like
|
— |
PTHR23023+269-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-462
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
52645.020
|
7.204
|
6.500
|
23.593
|
14.935
|
46.104
|
53.896
|
13.420
|
10.173
|
48.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
465.032
|
934.386
|
694.980
|
316.582
|
345.778
|
425.763
|
460.207
|
333.142
|
463.712
|
370.165
|
410.257
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.657
|
-1.698
|
-1.025
|
— |
0.315
|
— |
-0.462
|
0.608
|
— | — | — | — | — |
No JSON data available for plots.