Hg_chrom2_TN10mRNA_3679
Organism: Heterodera glycines Gene Locus: chr2:7903424-7906110 Feature type: polypeptideProtein Sequence
Length: 650
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.109 | 0.93 | 1.091 | 0.371 | 1.436 | 0.71 | 0.751 | 0.769 | 0.752 | 0.915 | 1.329 | 0.543 | 1.923 | 1.183 | 0.973 | 0.769 | 0.681 | 1.189 | 0.947 | 1.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3497
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-37
|
— |
0.534
|
— |
0.000
|
0.254
|
0.218
|
0.098
|
0.304
|
0.950
|
0.203
|
0.180
|
0.074
|
0.363
|
0.288
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007006
|
1.000
|
1.000
|
Hsc_gene_4761.t1
|
Hsc_gene_4761.t1
|
— |
P34329.2 Probable protein disulfide-isomerase A4 [Caenorhabditis elegans]
|
KAI1729779.1 thioredoxin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003756
|
GO:0005575_0.849|GO:0110165_0.849|GO:0008150_0.813|GO:0005622_0.785|GO:0009987_0.722|GO:0016020_0.701|GO:0005737_0.698|GO:0043226_0.680|GO:0043229_0.664|GO:0043227_0.637|GO:0071944_0.621|GO:0043231_0.616|GO:0003674_0.590|GO:0005886_0.582|GO:0003824_0.504
|
IPR005788+70-166_182-280_533-636+|IPR005792+177-645+|IPR013766+36-169_67-165_173-283_179-277_506-638_531-635+|IPR017937+84-102_198-216_550-568+|IPR036249+59-165_172-281_287-391_388-524_495-637+
|
— |
PF00085+67-165_179-277_531-635+Thioredoxin|PF13848+309-505+Thioredoxin-like_domain
|
G3DSA:3.40.30.10:FF:000017+55-169_172-282+Protein_disulfide-isomerase_A4
|
PTHR18929+177-649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-650
|
3idv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
73162.860
|
6.231
|
-2.000
|
29.692
|
13.538
|
46.000
|
54.000
|
15.077
|
14.615
|
50.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3072.231
|
3660.063
|
2747.521
|
2619.712
|
2343.885
|
2654.635
|
2791.346
|
2634.817
|
7766.273
|
321.815
|
3512.297
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.643
|
-0.620
|
— |
-0.192
|
0.194
|
— | — | — |
3.917
|
— |
3.566
|
— | — |