Hg_chrom2_TN10mRNA_3681
Organism: Heterodera glycines Gene Locus: chr2:7908586-7912562 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.452 | 1.421 | 1.313 | 0.192 | 1.759 | 1.709 | 0.794 | 0.278 | 1.111 | 0.901 | 1.263 | 3.922 | 1.698 | 0.427 | 1.361 | 0.556 | 0.82 | 0.758 | 0.0 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3499
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.431
|
0.150
|
0.112
|
0.605
|
0.222
|
0.257
|
0.157
|
0.006
|
0.324
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007008
|
1.000
|
1.000
|
Hsc_gene_4763.t2
|
Hsc_gene_4763.t1;Hsc_gene_4763.t2
|
— |
P04464.3 Calmodulin [Triticum aestivum]
|
KAI1732238.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.868|GO:0110165_0.866|GO:0005622_0.818|GO:0005737_0.766|GO:0008150_0.757|GO:0016020_0.710|GO:0043226_0.628|GO:0043229_0.612|GO:0003674_0.587|GO:0009987_0.582|GO:0043227_0.514
|
IPR002048+20-55_24-52_24-86_25-86_56-91_60-88_112-147_115-176_116-144_116-179_150-180_154-180+|IPR011992+23-179+|IPR018247+33-45_69-81_163-175+
|
SM00054+24-52_60-88_116-144_154-180+
|
PF13499+25-86_115-176+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000178+17-115+Calmodulin-2_A
|
PTHR10891+22-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
21001.850
|
4.875
|
-4.500
|
33.333
|
8.889
|
55.000
|
45.000
|
15.556
|
17.778
|
40.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
808.889
|
314.447
|
1043.417
|
677.365
|
445.124
|
366.661
|
506.830
|
560.833
|
846.134
|
1436.287
|
1183.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.500
|
0.970
|
-0.514
|
-0.639
|
-0.265
|
0.477
|
0.508
|
— | — | — | — | — | — |
No JSON data available for plots.