Hg_chrom2_TN10mRNA_3682
Organism: Heterodera glycines Gene Locus: chr2:7912989-7916905 Feature type: polypeptideProtein Sequence
Length: 609
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 0.649 | 0.597 | 0.849 | 1.04 | 1.432 | 0.508 | 2.381 | 1.131 | 1.021 | 0.473 | 1.739 | 0.912 | 1.421 | 2.212 | 1.314 | 0.834 | 0.423 | 1.642 | 1.159 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRQQQHQSTRKGHR,RRDRRRRPTSHRKKST,RRMLVELEYYARRRKYDR,RRTSRKGRRSRRKRSRERAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.207
|
0.111
|
0.007
|
0.280
|
0.123
|
0.428
|
0.308
|
0.020
|
0.645
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000535
|
1.000
|
6.000
|
Hsc_gene_4764.t1;Hsc_gene_4764.t2;Hsc_gene_4764.t3;Hsc_gene_4764.t4;Hsc_gene_4764.t5;Hsc_gene_4764.t6
|
Hsc_gene_4764.t2;Hsc_gene_4764.t3;Hsc_gene_4764.t4;Hsc_gene_4764.t5
|
— | — |
XP_045096435.1 Protein CBG18288 [Caenorhabditis briggsae];CAP35765.2 Protein CBG18288 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR36694+3-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-609
|
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
70822.470
|
9.901
|
41.500
|
28.243
|
14.122
|
50.903
|
49.097
|
18.719
|
9.524
|
44.499
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
455.554
|
416.522
|
577.253
|
372.868
|
274.078
|
678.873
|
769.505
|
711.748
|
454.543
|
226.826
|
324.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.242
|
-0.297
|
-0.522
|
-0.476
|
1.323
|
0.191
|
— | — | — | — | — | — | — |
No JSON data available for plots.